Searching journal content for articles similar to Gill et al. 33 (12): 2060.

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  1. Research: Analyzing super-enhancer temporal dynamics reveals potential critical enhancers and their gene regulatory networks underlying skeletal muscle development
    • Song Zhang,
    • Chao Wang,
    • Shenghua Qin,
    • Choulin Chen,
    • Yongzhou Bao,
    • Yuanyuan Zhang,
    • Lingna Xu,
    • Qingyou Liu,
    • Yunxiang Zhao,
    • Kui Li,
    • Zhonglin Tang,
    • and Yuwen Liu
    Genome Res. December 2024 34: 2190-2202; Published in Advance October 21, 2024, doi:10.1101/gr.278344.123
    ...myofiber formation and hypertrophy stages. By developing an innovative approach integrating SE temporal patterns, eRNA annotation, -wide association study (GWAS) signals, and self-transcribing active regulatory region sequencing (STARR-seq) experiments, Our study not only reveals the critical enhancer...
  2. Method: Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
    • Pengfei Yu,
    • Shu Xiao,
    • Xiaoyun Xin,
    • Chun-Xiao Song,
    • Wei Huang,
    • Darina McDee,
    • Tetsuya Tanaka,
    • Ting Wang,
    • Chuan He,
    • and Sheng Zhong
    Genome Res. February 2013 23: 352-364; Published in Advance October 2, 2012, doi:10.1101/gr.144949.112
    ...distinguished gene bodies, promoters, and enhancers, but also were predictive of bidirectional promoters, miRNA promoters, and piRNAs. This suggests specific epigenomic patterns exist on piRNA genes much earlier than germ cell development. Temporal changes of H3K4me2, unmethylated CpG, and H2A.Z were predictive...
  3. Review: Origins, evolution, and phenotypic impact of new genes
    • Henrik Kaessmann
    Genome Res. October 2010 20: 1313-1326; Published in Advance July 22, 2010, doi:10.1101/gr.101386.109
    ...importance of de novo protein-coding gene birth relative to other mechanisms of new gene formation. Origins of noncoding RNA genes Recent transcriptome studies have unveiled an unexpectedly rich repertoire of noncoding RNA species, which, in mammals, are derived from hundreds of small and thousands of lncRNA...
  4. Research: KRAB zinc-finger proteins regulate endogenous retroviruses to sculpt germline transcriptomes and genome evolution
    • Kai Otsuka,
    • Akihiko Sakashita,
    • So Maezawa,
    • Richard M. Schultz,
    • and Satoshi H. Namekawa
    Genome Res. March 2025 35: 417-431; Published in Advance March 12, 2025, doi:10.1101/gr.279924.124
    ...elements (LTRs).Testis-specific expression of ERVs in humans and mice was initially reported over 40 years ago (Del Villano and Lerner 1976), and recent studies reveal regulatory functions for TEs in male meiosis. These functions include post-transcriptional regulation of mRNA and long noncoding RNAs (lncRNAs...
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