Searching journal content for articles similar to Gianfrancesco et al. 11 (12): 2095.

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  1. Research: Accumulation and ineffective silencing of transposable elements on an avian W Chromosome
    • Vera M. Warmuth,
    • Matthias H. Weissensteiner,
    • and Jochen B.W. Wolf
    Genome Res. April 2022 32: 671-681; Published in Advance February 11, 2022, doi:10.1101/gr.275465.121
    ....Assigning all annotated TE copies to bins of increasing divergence from their respective, family-level, consensus sequences (Kapusta et al. 2017) shows that, across all chromosome types, a large proportion of LTRs was young (0%–1% divergence) (Fig. 2A), whereas LINEs were predominantly older (>10% divergence...
  2. Resource: Genome biology of the darkedged splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation
    • Kang Du,
    • Martin Pippel,
    • Susanne Kneitz,
    • Romain Feron,
    • Irene da Cruz,
    • Sylke Winkler,
    • Brigitta Wilde,
    • Edgar G. Avila Luna,
    • Gene Myers,
    • Yann Guiguen,
    • Constantino Macias Garcia,
    • and Manfred Schartl
    Genome Res. March 2022 32: 583-594; Published in Advance January 26, 2022, doi:10.1101/gr.275826.121
    ....5 Mb (Fig. 4B,C). These results indicate that scaffold 20 is the sex chromosome in darkedged splitfin, and that a large region spanning 80% of the sex chromosome is differentiated between the X and Y Chromosomes.To identify the male-specific region and to elucidate the evolution of the sex chromosomes...
  3. Research: Quantitative analysis of Y-Chromosome gene expression across 36 human tissues
    • Alexander K. Godfrey,
    • Sahin Naqvi,
    • Lukáš Chmátal,
    • Joel M. Chick,
    • Richard N. Mitchell,
    • Steven P. Gygi,
    • Helen Skaletsky,
    • and David C. Page
    Genome Res. June 2020 30: 860-873; Published in Advance May 27, 2020, doi:10.1101/gr.261248.120
    ...of the two pseudoautosomal regions (PAR1, PAR2), the X and Y Chromosomes have diverged in sequence. The locations of protein-coding genes and multicopy gene families in the male-specific region of the human Y Chromosome (MSY; blue) are shown at right. The X-linked homologs of MSY genes are annotated...
  4. Resource: A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes
    • Jing Liu,
    • Zongji Wang,
    • Jing Li,
    • Luohao Xu,
    • Jiaqi Liu,
    • Shaohong Feng,
    • Chunxue Guo,
    • Shengchan Chen,
    • Zhanjun Ren,
    • Jinpeng Rao,
    • Kai Wei,
    • Yuezhou Chen,
    • Erich D. Jarvis,
    • Guojie Zhang,
    • and Qi Zhou
    Genome Res. March 2021 31: 497-511; Published in Advance January 6, 2021, doi:10.1101/gr.271569.120
    ...to be driven by clustering their centromeres in the nuclear interior, away from the macrochromosomes in the nuclear periphery. Unlike nonratite birds, only less than one-third of the emu W Chromosome regions have lost homologous recombination and diverged between the sexes. The emu W is demarcated...
  5. Research: Regional epigenetic differentiation of the Z Chromosome between sexes in a female heterogametic system
    • Dan Sun,
    • Donna L. Maney,
    • Thomas S. Layman,
    • Paramita Chatterjee,
    • and Soojin V. Yi
    Genome Res. October 2019 29: 1673-1684; Published in Advance September 23, 2019, doi:10.1101/gr.248641.119
    ....We found that differential DNA methylation of the Z and W Chromosomes was associated with differential expression of the Z and W gametologs (homologous genes on the sex chromosomes). In the 26 pairs of Z/W gametologs (see Methods), both promoters and gene bodies of the W Chromosome were significantly...
  6. Research: Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution
    • Veronica J. Murtagh,
    • Denis O'Meally,
    • Natasha Sankovic,
    • Margaret L. Delbridge,
    • Yoko Kuroki,
    • Jeffrey L. Boore,
    • Atsushi Toyoda,
    • Kristen S. Jordan,
    • Andrew J. Pask,
    • Marilyn B. Renfree,
    • Asao Fujiyama,
    • Jennifer A. Marshall Graves,
    • and Paul D. Waters
    Genome Res. March 2012 22: 498-507; Published in Advance November 29, 2011, doi:10.1101/gr.120790.111
    ...Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution Veronica J. Murtagh 1 , 2 , Denis O'Meally 1 , 3 , Natasha Sankovic 1 , 2 , 4 , Margaret L. Delbridge 1 , 2 , Yoko Kuroki...
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  7. Research: Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation
    • Wesley A. Brashear,
    • Terje Raudsepp,
    • and William J. Murphy
    Genome Res. December 2018 28: 1841-1851; Published in Advance October 31, 2018, doi:10.1101/gr.237586.118
    ...of notable events in felid Y Chromosome evolution.Three ampliconic MSY genes arose from ancestral X–Y homologs: CUL4BY, CLDN34Y, and TSPY1. No single scaffold contained the entire coding sequence of CUL4BY. Three scaffolds—Y12, Y15, and Y18—had sequences that corresponded to the first five to nine exons...
  8. Resource: The pig X and Y Chromosomes: structure, sequence, and evolution
    • Benjamin M. Skinner,
    • Carole A. Sargent,
    • Carol Churcher,
    • Toby Hunt,
    • Javier Herrero,
    • Jane E. Loveland,
    • Matt Dunn,
    • Sandra Louzada,
    • Beiyuan Fu,
    • William Chow,
    • James Gilbert,
    • Siobhan Austin-Guest,
    • Kathryn Beal,
    • Denise Carvalho-Silva,
    • William Cheng,
    • Daria Gordon,
    • Darren Grafham,
    • Matt Hardy,
    • Jo Harley,
    • Heidi Hauser,
    • Philip Howden,
    • Kerstin Howe,
    • Kim Lachani,
    • Peter J.I. Ellis,
    • Daniel Kelly,
    • Giselle Kerry,
    • James Kerwin,
    • Bee Ling Ng,
    • Glen Threadgold,
    • Thomas Wileman,
    • Jonathan M.D. Wood,
    • Fengtang Yang,
    • Jen Harrow,
    • Nabeel A. Affara,
    • and Chris Tyler-Smith
    Genome Res. January 2016 26: 130-139; Published in Advance November 11, 2015, doi:10.1101/gr.188839.114
    ..., and thereby to reveal mechanisms underlying pig X and Y Chromosome evolution. [Supplemental material is available for this article.] The therian (marsupial and eutherian) sex chromosomes evolved originally from a homologous pair of autosomes (Ohno 1967a) ∼170–180 million years ago (Livernois et al. 2012...
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  9. LETTER: A Short Pseudoautosomal Region in Laboratory Mice
    • Jo Perry,
    • Steve Palmer,
    • Anastasia Gabriel,
    • and Alan Ashworth
    Genome Res. November 1, 2001 11: 1826-1832; doi:10.1101/gr.203001
    ..., that is, the point of divergence of X-specific and X-Y–identical sequences. In addition, we have investigated the size of the mouse PAR by integrating a unique restriction endonuclease recognition site just proximal to the pseudoautosomal boundary by homologous recombination. Restriction digestion...
  10. LETTER: Complex Events in the Evolution of the Human Pseudoautosomal Region 2 (PAR2)
    • Fadi J. Charchar,
    • Marta Svartman,
    • Nisrine El-Mogharbel,
    • Mario Ventura,
    • Patrick Kirby,
    • Maria R. Matarazzo,
    • Alfredo Ciccodicola,
    • Mariano Rocchi,
    • Maurizio D'Esposito,
    • and Jennifer A. Marshall Graves
    Genome Res. February 1, 2003 13: 281-286; Published in Advance January 14, 2003, doi:10.1101/gr.390503
    .... , Archidiacono N. , Graves J.A.M. , Forabosco A. , D'Urso M. ( 2001b ) Differential divergence of three human pseudoautosomal genes and their mouse homologs: Implications for sex chromosome evolution. Genome Res. 11 : 2095 – 2100 . ↵ Graves J.A.M. ( 1995 ) The origin and function of the mammalian Y chromosome...
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