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Research: Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary
- Satyam P. Srivastav,
- Cédric Feschotte,
- and Andrew G. Clark
Genome Res. May 2024 34: 711-724; Published in Advance May 15, 2024, doi:10.1101/gr.278062.123
...in Drosophila melanogaster, much less is known about the origin and evolution of piCs in this or any other species. To investigate piC origin and evolution, we use a population genomic approach to compare piC activity and sequence composition across eight geographically distant strains of D. melanogaster...
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Research: Diversification and collapse of a telomere elongation mechanism
- Bastien Saint-Leandre,
- Son C. Nguyen,
- and Mia T. Levine
Genome Res. June 2019 29: 920-931; Published in Advance May 28, 2019, doi:10.1101/gr.245001.118
...account for this retrotransposon lineage diversity. In Drosophila biarmipes, telomere-specialized elements have disappeared completely. De novo assembly of long reads and cytogenetics confirmed this species-specific collapse of retrotransposon-dependent telomere elongation. Instead, telomere...
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Research: SORBS2 transcription is activated by telomere position effect–over long distance upon telomere shortening in muscle cells from patients with facioscapulohumeral dystrophy
- Jérôme D. Robin,
- Andrew T. Ludlow,
- Kimberly Batten,
- Marie-Cécile Gaillard,
- Guido Stadler,
- Frédérique Magdinier,
- Woodring E. Wright,
- and Jerry W. Shay
Genome Res. December 2015 25: 1781-1790; Published in Advance September 10, 2015, doi:10.1101/gr.190660.115
..., Marseille 13385 Cedex 05, France; 3 Center for Excellence in Genomics Medicine Research, King Abdulaziz University, Jeddah 21589, Saudi Arabia Corresponding authors: Jerry.Shay@UTSouthwestern.edu , Jerome.robin@unice.fr Abstract DNA is organized into complex three...
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Method: Double insertion of transposable elements provides a substrate for the evolution of satellite DNA
- Michael P. McGurk and
- Daniel A. Barbash
Genome Res. May 2018 28: 714-725; Published in Advance March 27, 2018, doi:10.1101/gr.231472.117
..., yet most can be detected as tandems, demonstrating that additional mechanisms allow tandem formation (Fig. 3B; Supplemental Fig. S5B,C). These include the Drosophila telomeric TEs, which form head-to-tail tandems whenever two elements of the same family insert consecutively at the same telomere...
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Method: Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster
- Bing He,
- Amy Caudy,
- Lance Parsons,
- Adam Rosebrock,
- Attilio Pane,
- Sandeep Raj,
- and Eric Wieschaus
Genome Res. December 2012 22: 2507-2519; Published in Advance June 28, 2012, doi:10.1101/gr.137406.112
...Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster Bing He 1 , Amy Caudy 2 , Lance Parsons 2 , Adam Rosebrock 3 , Attilio Pane 1 , Sandeep Raj 1...
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LETTER: Recombination Rate and the Distribution of Transposable Elements in the Drosophila melanogaster Genome
- Carène Rizzon,
- Gabriel Marais,
- Manolo Gouy,
- and Christian Biémont
Genome Res. March 1, 2002 12: 400-407; Published in Advance February 15, 2002, doi:10.1101/gr.210802
...Recombination Rate and the Distribution of Transposable Elements in the Drosophila melanogaster Genome Carène Rizzon , Gabriel Marais , Manolo Gouy , and Christian Biémont 1 Laboratoire de Biométrie et Biologie Evolutive, UnitéMixte de...
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LETTER: Transcriptional Interactions Between Yeast tRNA Genes, Flanking Genes and Ty Elements: A Genomic Point of View
- Eric C. Bolton and
- Jef D. Boeke
Genome Res. February 1, 2003 13: 254-263; doi:10.1101/gr.612203
...Transcriptional Interactions Between Yeast tRNA Genes, Flanking Genes and Ty Elements: A Genomic Point of View Eric C. Bolton and Jef D. Boeke 1 Department of Molecular Biology and Genetics, The Johns Hopkins University School of Medicine, Baltimore...
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Letter: Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
- Jian Lu and
- Andrew G. Clark
Genome Res. February 2010 20: 212-227; Published in Advance November 30, 2009, doi:10.1101/gr.095406.109
...at http://www..org.] Transposable elements (TEs) are mobile DNA sequences that make up a large fraction of eukaryotic s, contributing 45% of the human and 5.3% of the fruit fly s (Lander et al. 2001; Quesneville et al. 2005;Drosophila 12 Genomes Consortium et al. 2007). Due to their high copy number, TEs...
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LETTER: Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
- Andrew J. Gentles,
- Matthew J. Wakefield,
- Oleksiy Kohany,
- Wanjun Gu,
- Mark A. Batzer,
- David D. Pollock,
- and Jerzy Jurka
Genome Res. July 2007 17: 992-1004; Published in Advance May 10, 2007, doi:10.1101/gr.6070707
...families, with &gt;29% of the genome sequence comprised of copies of these elements. Monodelphis has at least four families of RTE, and we report support for horizontal transfer of this non-LTR retrotransposon. In addition to short interspersed elements (SINEs) mobilized by L1, we found several families...
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RESEARCH: Transposable Elements and Genome Organization: A Comprehensive Survey of Retrotransposons Revealed by the Complete Saccharomyces cerevisiae Genome Sequence
- Jin M. Kim,
- Swathi Vanguri,
- Jef D. Boeke,
- Abram Gabriel,
- and Daniel F. Voytas
Genome Res. May 1, 1998 8: 464-478; doi:10.1101/gr.8.5.464
...distribution. Increasingly, retrotransposons that engage in target site selection are being identified in other organisms. For example, two retrotransposons are associated with tRNA genes in Dictyostelium discoideum ( Marschalek et al. 1989 , 1990 ). In Drosophila melanogaster, the HeT-A and TART elements...

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