Searching journal content for articles similar to George et al. 11 (10): 1780.

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  1. LETTER: The Human MitoChip: A High-Throughput Sequencing Microarray for Mitochondrial Mutation Detection
    • Anirban Maitra,
    • Yoram Cohen,
    • Susannah E.D. Gillespie,
    • Elizabeth Mambo,
    • Noriyoshi Fukushima,
    • Mohammad O. Hoque,
    • Nila Shah,
    • Michael Goggins,
    • Joseph Califano,
    • David Sidransky,
    • and Aravinda Chakravarti
    Genome Res. May 2004 14: 812-819; doi:10.1101/gr.2228504
    ...with the availability of sensitive and rapid mutation detection platforms such as automated capillary sequencers and denaturing high-performance liquid chromatography (HPLC; Medintz et al. 2001 ; Liu et al. 2002 ), the routine sequencing of 16.5 kb of mitochondrial DNA is an onerous task. Microarrays are inherently...
  2. Methods: Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites
    • George A. Follows,
    • Pawan Dhami,
    • Berthold Göttgens,
    • Alexander W. Bruce,
    • Peter J. Campbell,
    • Shane C. Dillon,
    • Aileen M. Smith,
    • Christoph Koch,
    • Ian J. Donaldson,
    • Mike A. Scott,
    • Ian Dunham,
    • Mary E. Janes,
    • David Vetrie,
    • and Anthony R. Green
    Genome Res. October 2006 16: 1310-1319; Published in Advance September 8, 2006, doi:10.1101/gr.5373606
    ...DNaseI treated sample that had not been enriched by ligation-mediated primer extension. This input was labeled with Cyanine 5 dCTP (Perkin Elmer). Microarray fabrication The Tal1 and α-globin tiling path microarrays were fabricated as detailed ( Dhami et al. 2005 , 2006 ). In brief, primer pairs were...
  3. Methods: Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures
    • Georges Natsoulis,
    • Laurent El Ghaoui,
    • Gert R.G. Lanckriet,
    • Alexander M. Tolley,
    • Fabrice Leroy,
    • Shane Dunlea,
    • Barrett P. Eynon,
    • Cecelia I. Pearson,
    • Stuart Tugendreich,
    • and Kurt Jarnagin
    Genome Res. May 2005 15: 724-736; doi:10.1101/gr.2807605
    ...Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures Georges Natsoulis 1 , 4 , Laurent El Ghaoui 2 , Gert R.G. Lanckriet 2 , Alexander M. Tolley 1 , Fabrice Leroy 3 , Shane Dunlea 1...
  4. LETTER: Representational Oligonucleotide Microarray Analysis: A High-Resolution Method to Detect Genome Copy Number Variation
    • Robert Lucito,
    • John Healy,
    • Joan Alexander,
    • Andrew Reiner,
    • Diane Esposito,
    • Maoyen Chi,
    • Linda Rodgers,
    • Amy Brady,
    • Jonathan Sebat,
    • Jennifer Troge,
    • Joseph A. West,
    • Seth Rostan,
    • Ken C.Q. Nguyen,
    • Scott Powers,
    • Kenneth Q. Ye,
    • Adam Olshen,
    • Ennapadam Venkatraman,
    • Larry Norton,
    • and Michael Wigler
    Genome Res. October 2003 13: 2291-2305; Published in Advance January 1, 2003, doi:10.1101/gr.1349003
    ...Representational Oligonucleotide Microarray Analysis: A High-Resolution Method to Detect Genome Copy Number Variation Robert Lucito 1 , 5 , John Healy 1 , Joan Alexander 1 , Andrew Reiner 1 , Diane Esposito 1 , Maoyen Chi 1...
  5. ARTICLE: Gene Expression Analyses of Arabidopsis Chromosome 2 Using a Genomic DNA Amplicon Microarray
    • Heenam Kim,
    • Erik C. Snesrud,
    • Brian Haas,
    • Foo Cheung,
    • Christopher D. Town,
    • and John Quackenbush
    Genome Res. March 1, 2003 13: 327-340; doi:10.1101/gr.552003
    ....R. , Chandler D.P. , Brockman F. ( 2001 ) Fabrication of DNA microarrays using unmodified oligonucleotide probes. BioTechniques 30 : 368 – 372 . ↵ Chee M. , Yang R. , Hubbell E. , Berno A. , Huang X.C. , Stern D. , Winkler J. , Lockhart D.J. , Morris M.S. , Fodor S.P. ( 1996 ) Accessing genetic information...
  6. Methods: Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome
    • Olof Emanuelsson,
    • Ugrappa Nagalakshmi,
    • Deyou Zheng,
    • Joel S. Rozowsky,
    • Alexander E. Urban,
    • Jiang Du,
    • Zheng Lian,
    • Viktor Stolc,
    • Sherman Weissman,
    • Michael Snyder,
    • and Mark B. Gerstein
    Genome Res. June 2007 17: 886-897; Published in Advance November 21, 2006, doi:10.1101/gr.5014606
    ...Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome Olof Emanuelsson 1 , 6 , Ugrappa Nagalakshmi 2 , Deyou Zheng 1 , Joel S. Rozowsky 1 , Alexander E. Urban 2...
    OPEN ACCESS ARTICLE
  7. Methods: X chromosome cDNA microarray screening identifies a functional PLP2 promoter polymorphism enriched in patients with X-linked mental retardation
    • Lilei Zhang,
    • Chunfa Jie,
    • Cassandra Obie,
    • Fatima Abidi,
    • Charles E. Schwartz,
    • Roger E. Stevenson,
    • David Valle,
    • and Tao Wang
    Genome Res. May 2007 17: 641-648; Published in Advance April 6, 2007, doi:10.1101/gr.5336307
    ...) and followed by RNeasy Midi-RNA preparation kit (Qiagen) ( http://oncwebl.onc.jhmi.edu/microarray ). Microarray fabrication and hybridization The cDNA inserts from EST clones were amplified by PCR using universal M13 forward and M13 reverse primers, purified using Montage PCR96 purification kit (Millipore...
  8. ARTICLE: A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization.
    • D Shalon,
    • S J Smith,
    • and P O Brown
    Genome Res. July 1996 6: 639-645; doi:10.1101/gr.6.7.639
    ...• SSC (20 • SSC = 3 M NaC1, 0.3 M Na 3 citrate) in preparation for spotting onto the glass under normal room temperature conditions. Preparation of DNA Microarrays The microarrays were fabricated on poly-L-lysine coated microscope slides (Sigma). A custom-built arraying ma- chine, consist ing of four...
  9. Method: High-throughput and genome-scale targeted mutagenesis using CRISPR in a nonmodel multicellular organism, Bombyx mori
    • Sanyuan Ma,
    • Tong Zhang,
    • Ruolin Wang,
    • Pan Wang,
    • Yue Liu,
    • Jiasong Chang,
    • Aoming Wang,
    • Xinhui Lan,
    • Le Sun,
    • Hao Sun,
    • Run Shi,
    • Wei Lu,
    • Dan Liu,
    • Na Zhang,
    • Wenbo Hu,
    • Xiaogang Wang,
    • Weiqing Xing,
    • Ling Jia,
    • and Qingyou Xia
    Genome Res. January 2024 34: 134-144; Published in Advance January 8, 2024, doi:10.1101/gr.278297.123
    ...-sgRNAs per gene) and synthesized on a microarray chip (Supplemental Table S1). These sgRNAs are designed to target 14,645 genes, and the distribution of these targeted genes across the is random (Supplemental Fig. S1), with these genes accounting for ∼86.76% of all genes in the . The rest of the genes, 13...
  10. RESOURCE: Detecting genetic variation in microarray expression data
    • Jennifer A. Greenhall,
    • Matthew A. Zapala,
    • Mario Cáceres,
    • Ondrej Libiger,
    • Carrolee Barlow,
    • Nicholas J. Schork,
    • and David J. Lockhart
    Genome Res. August 2007 17: 1228-1235; Published in Advance July 3, 2007, doi:10.1101/gr.6307307
    ...Detecting genetic variation in microarray expression data Jennifer A. Greenhall 1 , 2 , 8 , Matthew A. Zapala 3 , 4 , 8 , Mario Cáceres 1 , 5 , Ondrej Libiger 4 , Carrolee Barlow 1 , 6 , Nicholas J. Schork 3 , 4...
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