Searching journal content for articles similar to Geer et al. 12 (10): 1619.

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  1. Methods: High-Content Screening Microscopy Identifies Novel Proteins With a Putative Role in Secretory Membrane Traffic
    • Vytaute Starkuviene,
    • Urban Liebel,
    • Jeremy C. Simpson,
    • Holger Erfle,
    • Annemarie Poustka,
    • Stefan Wiemann,
    • and Rainer Pepperkok
    Genome Res. October 2004 14: 1948-1956; doi:10.1101/gr.2658304
    ...kinase) and protein metabolism (e.g., AL136807, homologous to RAMP4, which itself is involved in protein glycosylation during translocation). Specificity of our assays could be demonstrated by the finding that none of the proteins predicted to be involved in general cellular or nucleic acid metabolism (e...
  2. Letter: Domain shuffling and the evolution of vertebrates
    • Takeshi Kawashima,
    • Shuichi Kawashima,
    • Chisaki Tanaka,
    • Miho Murai,
    • Masahiko Yoneda,
    • Nicholas H. Putnam,
    • Daniel S. Rokhsar,
    • Minoru Kanehisa,
    • Nori Satoh,
    • and Hiroshi Wada
    Genome Res. August 2009 19: 1393-1403; Published in Advance May 14, 2009, doi:10.1101/gr.087072.108
    ...taxa (Fig. 1A). Surveying the NCBI Conserved Domain Database (CDD) with each domain pair using CDART searches (http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd. shtml) identified 11 of the pairs in invertebrates such as bees, Drosophila, or Caenorhabditis elegans (Supplemental Table 3; some genes from...
  3. Methods: Visualizing Sequence Similarity of Protein Families
    • Vamsi Veeramachaneni and
    • Wojciech Makałowski
    Genome Res. June 2004 14: 1160-1169; Published in Advance May 12, 2004, doi:10.1101/gr.2079204
    ...: 1575 –1584. ↵ Florea, L., Hartzell, G., Zhang, Z., Rubin, G.M., and Miller, W. 1998 . A computer program for aligning a CDNA sequence with a genomic DNA sequence. Genome Res. 8 : 967 –974. ↵ Geer, L.Y., Domrachev, M., Lipman, D.J., and Bryant, S.H. 2002 . CDART: Protein homology by domain architecture...
  4. LETTER: Comparative Analysis of Apoptosis and Inflammation Genes of Mice and Humans
    • John C. Reed,
    • Kutbuddin Doctor,
    • Ana Rojas,
    • Juan M. Zapata,
    • Christian Stehlik,
    • Loredana Fiorentino,
    • Jason Damiano,
    • Wilfried Roth,
    • Shu-ichi Matsuzawa,
    • Ruchi Newman,
    • Shinichi Takayama,
    • Hiroyuki Marusawa,
    • Famming Xu,
    • Guy Salvesen,
    • RIKEN GER Group,
    • GSL Members,
    • and Adam Godzik
    Genome Res. June 2003 13: 1376-1388; doi:10.1101/gr.1053803
    ...of Inhibitor of Apoptosis Proteins (IAPs); (6) Bcl-2 homology (BH) domains of Bcl-2 family proteins; (7) Tumor Necrosis Factor (TNF)-family ligands; (8) TNF receptors (TNFR); (9) TIR domains; (10) PAAD (PYRIN; PYD, DAPIN); (11) nucleotide-binding NACHT domains; (12) TRAFs; (13) Hsp70-binding BAG domains...
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