Searching journal content for articles similar to Gaynor-Gillett et al. 35 (8): 1887.

Displaying results 1-5 of 5
For checked items
  1. Research: Enhancer–silencer transitions in the human genome
    • Di Huang and
    • Ivan Ovcharenko
    Genome Res. March 2022 32: 437-448; Published in Advance February 1, 2022, doi:10.1101/gr.275992.121
    ...identified with self-transcribing active regulatory region sequencing platform (STARR-seq) (Doni Jayavelu et al. 2020) and 3909 K562 silencers reported using the repressive ability of silencer element assay (ReSE) (Pang and Snyder 2020). After redundancy exclusion, we assembled 7701 distinct silencers...
    OPEN ACCESS ARTICLE
  2. Research: Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome
    • Keerthi T. Chathoth and
    • Nicolae Radu Zabet
    Genome Res. April 2019 29: 613-625; Published in Advance February 1, 2019, doi:10.1101/gr.246710.118
    ...of Drosophila melanogaster. Science 287: 2185–2195. doi:10.1126/science.287.5461.2185 ↵Arnold CD, Gerlach D, Stelzer C, Boryń ŁM, Rath M, Stark A. 2013. Genome-wide quantitative enhancer activity maps identified by STARR-seq. Science 339: 1074–1077. doi:10.1126/science.1232542 ↵Benedetti F, Racko D, Dorier J...
    OPEN ACCESS ARTICLE
  3. Research: The role of insulators and transcription in 3D chromatin organization of flies
    • Keerthi T. Chathoth,
    • Liudmila A. Mikheeva,
    • Gilles Crevel,
    • Jareth C. Wolfe,
    • Ioni Hunter,
    • Saskia Beckett-Doyle,
    • Sue Cotterill,
    • Hongsheng Dai,
    • Andrew Harrison,
    • and Nicolae Radu Zabet
    Genome Res. April 2022 32: 682-698; Published in Advance March 30, 2022, doi:10.1101/gr.275809.121
    ...that the two distributions are not different. (F) Annotation of maintained and lost loops with respect to the features they connect: (P) promoters (up to 1 kb upstream of TSS), (E) enhancers, (G) genes, and (O) others. We used STARR-seq for enhancer annotation (Yanez-Cuna et al. 2014). (G) Percentage of genes...
    OPEN ACCESS ARTICLE
  4. Research: Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
    • Ryne C. Ramaker,
    • Andrew A. Hardigan,
    • Say-Tar Goh,
    • E. Christopher Partridge,
    • Barbara Wold,
    • Sara J. Cooper,
    • and Richard M. Myers
    Genome Res. July 2020 30: 939-950; Published in Advance July 2, 2020, doi:10.1101/gr.260463.119
    ...models and to identify the sequence elements most important in controlling regulatory activity at HOT loci, we performed a self-transcribing active regulatory region sequencing (STARR-seq)–based mutagenesis assay on 245 genomic loci that had previously shown activity in massively parallel or single...
    OPEN ACCESS ARTICLE
  5. Research: Polycomb misregulation in enterocytes drives tissue decline in the aging Drosophila intestine
    • Sarah M. Leichter,
    • Kami Ahmad,
    • and Steven Henikoff
    Genome Res. January 2026 36: 102-114; Published in Advance November 17, 2025, doi:10.1101/gr.281058.125
    ...to directly profile changes at regulatory elements, which single-cell RNA sequencing (scRNA-seq) does not capture. To identify regulatory elements that exhibit changes in H3K27me3 level with age within each cell type, we identified self-transcribing active regulatory region sequencing (STARR-seq) enhancers...
    OPEN ACCESS ARTICLE
For checked items

Search Results

New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research