Searching journal content for articles similar to Gatto and Berg 13 (4): 617.

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  1. Research: Natural diversity of telomere length distributions across 100 Saccharomyces cerevisiae strains
    • Clotilde Garrido,
    • Cintia Gómez-Muñoz,
    • Etienne Kornobis,
    • Nicolas Agier,
    • Oana Ilioaia,
    • Gilles Fischer,
    • and Zhou Xu
    Genome Res. March 2026 36: 522-533; Published in Advance January 16, 2026, doi:10.1101/gr.281132.125
    ..., Harley CB. 1992. Telomere length predicts replicative capacity of human fibroblasts. Proc Natl Acad Sci 89: 10114–10118. doi:10.1073/pnas.89.21.10114 ↵Bertuch AA, Lundblad V. 2003. The Ku heterodimer performs separable activities at double-strand breaks and chromosome termini. Mol Cell Biol 23: 8202...
  2. Research: Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery
    • Xiuli Bi,
    • Ying-Juan Cheng,
    • Bo Hu,
    • Xiaoli Ma,
    • Rui Wu,
    • Jia-Wei Wang,
    • and Chang Liu
    Genome Res. July 2017 27: 1162-1173; Published in Advance April 6, 2017, doi:10.1101/gr.215186.116
    ...with the nuclear periphery on a -wide scale. Results RE-mediated ChIP reveals nonrandom chromatin distribution at the nuclear periphery As a part of the NPC basket, the Arabidopsis nucleoporin NUP1 (also known as NUP136) has been shown to specifically localize at the nuclear periphery (Lu et al. 2010; Tamura et al...
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  3. Method: Theoretical framework for the difference of two negative binomial distributions and its application in comparative analysis of sequencing data
    • Alicia Petrany,
    • Ruoyu Chen,
    • Shaoqiang Zhang,
    • and Yong Chen
    Genome Res. October 2024 34: 1636-1650; Published in Advance October 15, 2024, doi:10.1101/gr.278843.123
    ...on testing the statistical significance for the difference of two negative binomial distributions (DOTNB). Although negative binomial distributions are well studied, the theoretical results for DOTNB remain largely unexplored. Here, we derive basic analytical results for DOTNB and examine its asymptotic...
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  4. Research: Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini
    • Chan Hyun Na,
    • Mustafa A. Barbhuiya,
    • Min-Sik Kim,
    • Steven Verbruggen,
    • Stephen M. Eacker,
    • Olga Pletnikova,
    • Juan C. Troncoso,
    • Marc K. Halushka,
    • Gerben Menschaert,
    • Christopher M. Overall,
    • and Akhilesh Pandey
    Genome Res. January 2018 28: 25-36; Published in Advance November 21, 2017, doi:10.1101/gr.226050.117
    ...-AUG or noncanonical translation initiation can also occur. However, the evidence for noncanonical translation initiation sites (TISs) is largely indirect and based on ribosome profiling (Ribo-seq) studies. Here, using a strategy specifically designed to enrich N termini of proteins, we demonstrate that many human...
  5. Research: De novo genome assemblies of two cryptodiran turtles with ZZ/ZW and XX/XY sex chromosomes provide insights into patterns of genome reshuffling and uncover novel 3D genome folding in amniotes
    • Basanta Bista,
    • Laura González-Rodelas,
    • Lucía Álvarez-González,
    • Zhi-qiang Wu,
    • Eugenia E. Montiel,
    • Ling Sze Lee,
    • Daleen B. Badenhorst,
    • Srihari Radhakrishnan,
    • Robert Literman,
    • Beatriz Navarro-Dominguez,
    • John B. Iverson,
    • Simon Orozco-Arias,
    • Josefa González,
    • Aurora Ruiz-Herrera,
    • and Nicole Valenzuela
    Genome Res. October 2024 34: 1553-1569; Published in Advance October 16, 2024, doi:10.1101/gr.279443.124
    ...is fundamental to elucidate the architecture and plasticity of s. Nonrandom interactions of linearly distant loci regulate gene function in species-specific patterns, affecting function, evolution, and, ultimately, speciation. Yet, data from nonmodel organisms are scarce. To capture the macroevolutionary...
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  6. Research: The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important
    • Erika M. Kvikstad and
    • Kateryna D. Makova
    Genome Res. May 2010 20: 600-613; Published in Advance March 10, 2010, doi:10.1101/gr.099044.109
    ...The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important Erika M. Kvikstad 1 and Kateryna D. Makova 2 Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, Pennsylvania 16802...
  7. Research: Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription
    • Larry D. Mesner,
    • Veena Valsakumar,
    • Neerja Karnani,
    • Anindya Dutta,
    • Joyce L. Hamlin,
    • and Stefan Bekiranov
    Genome Res. March 2011 21: 377-389; Published in Advance December 20, 2010, doi:10.1101/gr.111328.110
    ...Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription Larry D. Mesner 1 , Veena Valsakumar 1 , Neerja Karnani 1 , Anindya Dutta 1 , 2...
  8. LETTER: Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana
    • Stephen I. Wright,
    • Newton Agrawal,
    • and Thomas E. Bureau
    Genome Res. August 2003 13: 1897-1903; doi:10.1101/gr.1281503
    ...Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana Stephen I. Wright 1 , 3 , Newton Agrawal 2 , and Thomas E. Bureau 2 1 Institute of Cell, Animal and Population Biology, University...
  9. LETTER: Retroelement Distributions in the Human Genome: Variations Associated With Age and Proximity to Genes
    • Patrik Medstrand,
    • Louie N. van de Lagemaat,
    • and Dixie L. Mager
    Genome Res. October 1, 2002 12: 1483-1495; doi:10.1101/gr.388902
    ...Retroelement Distributions in the Human Genome: Variations Associated With Age and Proximity to Genes Patrik Medstrand 1 , 4 , Louie N. van de Lagemaat 2 , 3 , 4 , and Dixie L. Mager 2 , 3 , 5 1Department of Cell and Molecular Biology...
  10. ARTICLES: Karyotype distributions in a stochastic model of reciprocal translocation.
    • D Sankoff and
    • V Ferretti
    Genome Res. January 1996 6: 1-9; doi:10.1101/gr.6.1.1
    ...Karyotype distributions in a stochastic model of reciprocal translocation. D Sankoff and V Ferretti Centre de Recherches Mathématiques, Université de Montréal, Québec, Canada. sankoff@ere.umontreal.ca Abstract A random process of reciprocal...
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