Searching journal content for articles similar to Gao et al. 32 (1): 97.

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  1. Research: Cytosolic and mitochondrial translation elongation are coordinated through the molecular chaperone TRAP1 for the synthesis and import of mitochondrial proteins
    • Rosario Avolio,
    • Ilenia Agliarulo,
    • Daniela Criscuolo,
    • Daniela Sarnataro,
    • Margherita Auriemma,
    • Sabrina De Lella,
    • Sara Pennacchio,
    • Giovanni Calice,
    • Martin Y. Ng,
    • Carlotta Giorgi,
    • Paolo Pinton,
    • Barry S. Cooperman,
    • Matteo Landriscina,
    • Franca Esposito,
    • and Danilo Swann Matassa
    Genome Res. August 2023 33: 1242-1257; Published in Advance July 24, 2023, doi:10.1101/gr.277755.123
    ...in mammalian mitochondria, it does not appear to play a role in making translatable mRNAs (Mance et al. 2020). Because uncapped mRNAs may or may not be subject to circularization (Komar and Hatzoglou 2011), the model also fits with the evidence indicating that uncapped transcripts are more efficiently...
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  2. Resource: A systems view on DNA damage response kinetics in Tetrahymena
    • Emily Nischwitz,
    • Vivien Schoonenberg,
    • Rachel Mullner,
    • Albert Fradera-Sola,
    • Susanne Zimbelmann,
    • Joshua J Smith,
    • and Falk Butter
    Genome Res. January 28, 2026 gr.281000.125; Published in Advance January 28, 2026, doi:10.1101/gr.281000.125
    ...transcriptome and proteome expression profiles, we harvested samples at 0, 1, 2, 3, 4, 6, and 88 8 hours after treatment (0 h - 8 h) in quadruplicate, and performed mRNA sequencing (RNA-89 seq) and high-resolution quantitative mass spectrometry (MS) measurement (Figure 1A). 90 Transcriptomes and proteomes were...
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  3. Research: Genomic regulatory landscape underlying the antiviral response of Atlantic salmon
    • Shahmir Naseer,
    • Thomas C Clark,
    • Bertrand Collet,
    • Pooran Dewari,
    • Damir Baranasic,
    • Daniel J Macqueen,
    • Pierre Boudinot,
    • and Samuel A.M. Martin
    Genome Res. October 22, 2025 gr.280579.125; Published in Advance October 22, 2025, doi:10.1101/gr.280579.125
    ...mRNA stability, translation efficiency, or degradation pathways (Carpenter et al., 2014). 460 Recent single-cell transcriptomic studies have highlighted the remarkable cellular 461 heterogeneity of Atlantic salmon immune cells, particularly in the head kidney (Andresen et 462 al., 2024...
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  4. Research: Chimeric mitochondrial RNA transcripts predict mitochondrial genome deletion mutations in mitochondrial genetic diseases and aging
    • Amy R. Vandiver,
    • Allen Herbst,
    • Paul Stothard,
    • and Jonathan Wanagat
    Genome Res. January 2025 35: 55-65; Published in Advance November 27, 2024, doi:10.1101/gr.279072.124
    ...processing, or impair mt-mRNA degradation/turnover pathways. Effects of chimeric mtRNAs on protein translation could include the sequestration of ribosomes and tRNAs on these aberrant transcripts. Chimeric mtRNAs could also bind other mtRNA transcripts or even leak into the cytoplasm (Kim et al. 2017...
  5. Method: Target-enriched nanopore sequencing and de novo assembly reveals co-occurrences of complex on-target genomic rearrangements induced by CRISPR-Cas9 in human cells
    • Keyi Geng,
    • Lara G. Merino,
    • Linda Wedemann,
    • Aniek Martens,
    • Małgorzata Sobota,
    • Yerma P. Sanchez,
    • Jonas Nørskov Søndergaard,
    • Robert J. White,
    • and Claudia Kutter
    Genome Res. October 2022 32: 1876-1891; Published in Advance September 30, 2022, doi:10.1101/gr.276901.122
    ...-bound tRNA genes reside in euchromatic genomic regions, which are marked by active histone modifications, such as histone H3 lysine 4 trimethylation (H3K4me3) (White 2011; Schmitt et al. 2014; Ottenburghs et al. 2021). tRNAs represent one of the most abundant RNA types, well known for decoding mRNA...
  6. Method: Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
    • Sushmita Roy,
    • Ilan Wapinski,
    • Jenna Pfiffner,
    • Courtney French,
    • Amanda Socha,
    • Jay Konieczka,
    • Naomi Habib,
    • Manolis Kellis,
    • Dawn Thompson,
    • and Aviv Regev
    Genome Res. June 2013 23: 1039-1050; Published in Advance May 2, 2013, doi:10.1101/gr.146233.112
    ...) and multicellular organisms (Brawand et al. 2011; Schmidt et al. 2012;Xiao et al. 2012). Such studiesmeasure and compare genomic profiles, including mRNA levels (Bergmann et al. 2003b; Tirosh et al. 2006;Wapinski et al. 2010; Brawand et al. 2011; Fowlkes et al. 2011; Rhind et al. 2011; Tirosh et al. 2011...
  7. PERSPECTIVE: Genomics in C. elegans: So many genes, such a little worm
    • LaDeana W. Hillier,
    • Alan Coulson,
    • John I. Murray,
    • Zhirong Bao,
    • John E. Sulston,
    • and Robert H. Waterston
    Genome Res. December 2005 15: 1651-1660; doi:10.1101/gr.3729105
    ...contains all the major types of eukaryotic RNA genes: >1300 ( Stricklin et al. 2005 ) of these genes have been identified, including 630 tRNAs, 78 snRNAs, and 17 snoRNAs. Of the rRNA genes, the 18S, 28S, and 5.8S are transcribed separately by RNA polymerase I in the ∼55 copies of the 7.2-kb rDNA repeat...
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