Searching journal content for articles similar to Gómez-Valero et al. 17 (8): 1178.

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  1. Review: De novo gene birth and the conundrum of ORFan genes in bacteria
    • Md. Hassan uz-Zaman and
    • Howard Ochman
    Genome Res. August 2025 35: 1679-1688; Published in Advance July 10, 2025, doi:10.1101/gr.280157.124
    ...↵Daubin V, Ochman H. 2004b. Start-up entities in the origin of new genes. Curr Opin Genet Dev 14: 616–619. doi:10.1016/j.gde.2004.09.004 ↵de Souza GA, Søfteland T, Koehler CJ, Thiede B, Wiker HG. 2009. Validating divergent ORF annotation of the Mycobacterium leprae through a full translation data set...
  2. Method: Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
    • Jakob Skou Pedersen,
    • Eivind Valen,
    • Amhed M. Vargas Velazquez,
    • Brian J. Parker,
    • Morten Rasmussen,
    • Stinus Lindgreen,
    • Berit Lilje,
    • Desmond J. Tobin,
    • Theresa K. Kelly,
    • Søren Vang,
    • Robin Andersson,
    • Peter A. Jones,
    • Cindi A. Hoover,
    • Alexei Tikhonov,
    • Egor Prokhortchouk,
    • Edward M. Rubin,
    • Albin Sandelin,
    • M. Thomas P. Gilbert,
    • Anders Krogh,
    • Eske Willerslev,
    • and Ludovic Orlando
    Genome Res. March 2014 24: 454-466; Published in Advance December 3, 2013, doi:10.1101/gr.163592.113
    ...G dinucleotides, as experimental evidence supports the longterm survival of methylated cytosines (5mC) in aDNA fragments (Briggs et al. 2010; Llamas et al. 2012). Genome-wide methylationmaps of the human have already been reconstructed using high-throughput sequencing in combination with a variety of approaches...
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  3. LETTER: Mutational and Selective Pressures on Codon and Amino Acid Usage in Buchnera, Endosymbiotic Bacteria of Aphids
    • Claude Rispe,
    • François Delmotte,
    • Roeland C.H.J. van Ham,
    • and Andres Moya
    Genome Res. January 2004 14: 44-53; Published in Advance December 12, 2003, doi:10.1101/gr.1358104
    ...), or that synonymous substitutions might be not always silent ( Graur and Li 2000 ). Interestingly, a similar interaction between the level of expression, the level of codon bias, and gene conservation (both synonymous and nonsynonymous) was demonstrated in Mycobacterium sp. ( de Miranda et al. 2000 ), supporting...
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