Searching journal content for articles similar to Froenicke et al. 16 (3): 306.

Displaying results 1-10 of 117
For checked items
  1. Research: Genomes of Ellobius species provide insight into the evolutionary dynamics of mammalian sex chromosomes
    • Eskeatnaf Mulugeta,
    • Evelyne Wassenaar,
    • Esther Sleddens-Linkels,
    • Wilfred F.J. van IJcken,
    • Edith Heard,
    • J. Anton Grootegoed,
    • Walter Just,
    • Joost Gribnau,
    • and Willy M. Baarends
    Genome Res. September 2016 26: 1202-1210; Published in Advance August 10, 2016, doi:10.1101/gr.201665.115
    ..., Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Genome Project Data Processing Subgroup. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078–2079. Lin F, Xing K, Zhang J, He X. 2012. Expression reduction in mammalian X chromosome evolution refutes Ohno’s hypothesis...
  2. Research: Birth, evolution, and transmission of satellite-free mammalian centromeric domains
    • Solomon G. Nergadze,
    • Francesca M. Piras,
    • Riccardo Gamba,
    • Marco Corbo,
    • Federico Cerutti,
    • Joseph G.W. McCarter,
    • Eleonora Cappelletti,
    • Francesco Gozzo,
    • Rebecca M. Harman,
    • Douglas F. Antczak,
    • Donald Miller,
    • Maren Scharfe,
    • Giulio Pavesi,
    • Elena Raimondi,
    • Kevin F. Sullivan,
    • and Elena Giulotto
    Genome Res. June 2018 28: 789-799; Published in Advance April 30, 2018, doi:10.1101/gr.231159.117
    ...domains identified by ChIP-seq analysis are ENCs located within the respective cytogenetically defined primary constrictions.Sequence assembly of satellite-free centromere domains and comparison with orthologous horse genomic regionsSeveral CENPA binding domains showed read-free gaps and distorted shapes...
  3. Forum: The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction
    • Guillaume Bourque,
    • Glenn Tesler,
    • and Pavel A. Pevzner
    Genome Res. March 2006 16: 311-313; doi:10.1101/gr.4631806
    .... Genome Res. 108 : 122 –138. ↵ Froenicke, L., Caldés, M.G., Graphodatsky, A., Müller, S., Lyons, L.A., Robinson, T.J., Volleth, M., Yang, F., and Wienberg, J. 2006 . Are molecular cytogenetics and bioinformatics suggesting diverging models of ancestral mammalian s? Genome Res. (this issue). ↵ Hillier, L...
  4. Research: Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution
    • Gang Li,
    • Brian W. Davis,
    • Terje Raudsepp,
    • Alison J. Pearks Wilkerson,
    • Victor C. Mason,
    • Malcolm Ferguson-Smith,
    • Patricia C. O'Brien,
    • Paul D. Waters,
    • and William J. Murphy
    Genome Res. September 2013 23: 1486-1495; Published in Advance June 20, 2013, doi:10.1101/gr.154286.112
    ...Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution Gang Li 1 , Brian W. Davis 1 , 2 , Terje Raudsepp 1 , 2 , Alison J. Pearks Wilkerson 1 , Victor C. Mason 1 , 2 , Malcolm...
  5. Method: Genome-wide characterization of centromeric satellites from multiple mammalian genomes
    • Can Alkan,
    • Maria Francesca Cardone,
    • Claudia Rita Catacchio,
    • Francesca Antonacci,
    • Stephen J. O'Brien,
    • Oliver A. Ryder,
    • Stefania Purgato,
    • Monica Zoli,
    • Giuliano Della Valle,
    • Evan E. Eichler,
    • and Mario Ventura
    Genome Res. January 2011 21: 137-145; Published in Advance November 16, 2010, doi:10.1101/gr.111278.110
    ...Genome-wide characterization of centromeric satellites from multiple mammalian genomes Can Alkan 1 , 6 , Maria Francesca Cardone 2 , 6 , Claudia Rita Catacchio 2 , Francesca Antonacci 1 , Stephen J. O'Brien 3 , Oliver A. Ryder 4...
  6. Research: Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)
    • Gang Li,
    • Brian W. Davis,
    • Eduardo Eizirik,
    • and William J. Murphy
    Genome Res. January 2016 26: 1-11; Published in Advance October 30, 2015, doi:10.1101/gr.186668.114
    ...-depthpopulation genomics in this group as a model system for better understanding the speciation process. Results We generated Illumina whole- genotyping data (∼63,000 SNPs) for 100 felid DNA samples covering virtually all recognized species and validated the consistency of genotyping quality and utility for phylogenomic...
  7. PERSPECTIVE: Ancestral genomes reconstruction: An integrated, multi-disciplinary approach is needed
    • Mariano Rocchi,
    • Nicoletta Archidiacono,
    • and Roscoe Stanyon
    Genome Res. December 2006 16: 1441-1444; Published in Advance October 19, 2006, doi:10.1101/gr.5687906
    ...) Are molecular cytogenetics and bioinformatics suggesting diverging models of ancestral mammalian s? Genome Res. 16 : 306 – 310 . ↵ Giglio, S. , Broman, K.W. , Matsumoto, N. , Calvari, V. , Gimelli, G. , Neumann, T. , Ohashi, H. , Voullaire, L. , Larizza, D. , Giorda, R. , et al. ( 2001 ) Olfactory receptor...
  8. LETTER: Reconstructing large regions of an ancestral mammalian genome in silico
    • Mathieu Blanchette,
    • Eric D. Green,
    • Webb Miller,
    • and David Haussler
    Genome Res. December 2004 14: 2412-2423; doi:10.1101/gr.2800104
    ...Reconstructing large regions of an ancestral mammalian genome in silico Mathieu Blanchette 1 , 4 , 5 , Eric D. Green 2 , Webb Miller 3 , and David Haussler 1 , 5 1 Howard Hughes Medical Institute, University of California, Santa...
  9. Resource: Breakpoint graphs and ancestral genome reconstructions
    • Max A. Alekseyev and
    • Pavel A. Pevzner
    Genome Res. May 2009 19: 943-957; Published in Advance February 13, 2009, doi:10.1101/gr.082784.108
    ...completed whole-genome sequencing projects marked the transition from gene-based phylogenetic studies to phylogenomics analysis of entire genomes. We developed an algorithm MGRA for reconstructing ancestral genomes and used it to study the rearrangement history of seven mammalian genomes: human, chimpanzee...
  10. ARTICLE: Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes
    • Guillaume Bourque,
    • Pavel A. Pevzner,
    • and Glenn Tesler
    Genome Res. April 2004 14: 507-516; doi:10.1101/gr.1975204
    ...rearrangements in human and mouse genomes revealed evidence for more rearrangements than thought previously and shed light on previously unknown features of mammalian evolution, like breakpoint reuse and numerous microrearrangements. However, two-way analysis cannot reveal the genomic architecture of ancestral...
For checked items

Search Results

Next 10 » New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research