Searching journal content for articles similar to Frazer et al. 14 (8): 1493.

Displaying results 1-10 of 16

For checked items

view abstracts
download to citation manager

Select this article
Resource: GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis
- Robyn L. Ball,
- Molly A. Bogue,
- Hongping Liang,
- Anuj Srivastava,
- David G. Ashbrook,
- Anna Lamoureux,
- Matthew W. Gerring,
- Alexander S. Hatoum,
- Matthew J. Kim,
- Hao He,
- Jake Emerson,
- Alexander K. Berger,
- David O. Walton,
- Keith Sheppard,
- Baha El Kassaby,
- Francisco Castellanos,
- Govindarajan Kunde-Ramamoorthy,
- Lu Lu,
- John Bluis,
- Sejal Desai,
- Beth A. Sundberg,
- Gary Peltz,
- Zhuoqing Fang,
- Gary A. Churchill,
- Robert W. Williams,
- Arpana Agrawal,
- Carol J. Bult,
- Vivek M. Philip,
- and Elissa J. Chesler
Genome Res. January 2024 34: 145-159; Published in Advance January 30, 2024, doi:10.1101/gr.278157.123
.... 2023).The phylogenetic trees also provide a rich genomic landscape to explore possible regions of cryptic genetic variation among strains; namely, variation that may have little effect on phenotypic variation within populations but may contribute to trait heritability across populations (Paaby...
OPEN ACCESS ARTICLE
Select this article
Resource: The western redcedar genome reveals low genetic diversity in a self-compatible conifer
- Tal J. Shalev,
- Omnia Gamal El-Dien,
- Macaire M.S. Yuen,
- Shu Shengqiang,
- Shaun D. Jackman,
- René L. Warren,
- Lauren Coombe,
- Lise van der Merwe,
- Ada Stewart,
- Lori B. Boston,
- Christopher Plott,
- Jerry Jenkins,
- Guifen He,
- Juying Yan,
- Mi Yan,
- Jie Guo,
- Jesse W. Breinholt,
- Leandro G. Neves,
- Jane Grimwood,
- Loren H. Rieseberg,
- Jeremy Schmutz,
- Inanc Birol,
- Matias Kirst,
- Alvin D. Yanchuk,
- Carol Ritland,
- John H. Russell,
- and Joerg Bohlmann
Genome Res. October 2022 32: 1952-1964; Published in Advance September 15, 2022, doi:10.1101/gr.276358.121
...from different subpopulations can be observed, although each principal component only explains a very small proportion of the variation between individuals, indicating that genetic differentiation is low.We annotated 17,728 SNPs across 2886 genomic scaffolds using the Ensembl variant effect predictor...
OPEN ACCESS ARTICLE
Select this article
Research: Crossover-active regions of the wheat genome are distinguished by DMC1, the chromosome axis, H3K27me3, and signatures of adaptation
- Andrew J. Tock,
- Daniel M. Holland,
- Wei Jiang,
- Kim Osman,
- Eugenio Sanchez-Moran,
- James D. Higgins,
- Keith J. Edwards,
- Cristobal Uauy,
- F. Chris H. Franklin,
- and Ian R. Henderson
Genome Res. September 2021 31: 1614-1628; Published in Advance August 23, 2021, doi:10.1101/gr.273672.120
...gigabases of sequence across 21 chromosomes. Meiotic crossovers are highly polarized along the chromosomes, with elevation in the gene-dense distal regions and suppression in the Gypsy retrotransposon-dense centromere-proximal regions. We profiled the genomic landscapes of the meiotic recombinase DMC1...
Select this article
Resource: The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains
- Toyoyuki Takada,
- Toshinobu Ebata,
- Hideki Noguchi,
- Thomas M. Keane,
- David J. Adams,
- Takanori Narita,
- Tadasu Shin-I,
- Hironori Fujisawa,
- Atsushi Toyoda,
- Kuniya Abe,
- Yuichi Obata,
- Yoshiyuki Sakaki,
- Kazuo Moriwaki,
- Asao Fujiyama,
- Yuji Kohara,
- and Toshihiko Shiroishi
Genome Res. August 2013 23: 1329-1338; Published in Advance April 19, 2013, doi:10.1101/gr.156497.113
...). In the most extreme case, we found a 717-kb unique and nonrepetitive consecutive sequence in the region between the SNPs at position 91,144,048 and 91,861,518 on chromosome 14 that lacked any SNP or short indel between B6 and JF1. To determine whether these blocks are widely distributed across the B6 , we...
OPEN ACCESS ARTICLE
Select this article
Research: Copy number variation analysis in the great apes reveals species-specific patterns of structural variation
- Elodie Gazave,
- Fleur Darré,
- Carlos Morcillo-Suarez,
- Natalia Petit-Marty,
- Angel Carreño,
- Urko M. Marigorta,
- Oliver A. Ryder,
- Antoine Blancher,
- Mariano Rocchi,
- Elena Bosch,
- Carl Baker,
- Tomàs Marquès-Bonet,
- Evan E. Eichler,
- and Arcadi Navarro
Genome Res. October 2011 21: 1626-1639; Published in Advance August 8, 2011, doi:10.1101/gr.117242.110
..., but also human-specific nonpolymorphic regions, that is, genomic regions that present structural polymorphism in all great apes, but are either fixed or present only rare and even pathogenic variants in humans. Results Comparing CNVs across species A total of 51 individuals from the four great ape species...
Select this article
Research: Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
- Ruth A. Swanson-Wagner,
- Steven R. Eichten,
- Sunita Kumari,
- Peter Tiffin,
- Joshua C. Stein,
- Doreen Ware,
- and Nathan M. Springer
Genome Res. December 2010 20: 1689-1699; Published in Advance October 29, 2010, doi:10.1101/gr.109165.110
...that hybridization intensity is not strongly affected until there are at least four to five SNPs within the probe sequence. This level of polymorphism spread across multiple portions of the coding region would represent a highly divergent allele. Analysis of the array CGH data identified 479 UpCNV genes and 3410...
Select this article
Research: Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations
- Mirte Bosse,
- Hendrik-Jan Megens,
- Ole Madsen,
- Richard P.M.A. Crooijmans,
- Oliver A. Ryder,
- Frédéric Austerlitz,
- Martien A.M. Groenen,
- and M. Angeles R. de Cara
Genome Res. July 2015 25: 970-981; Published in Advance June 10, 2015, doi:10.1101/gr.187039.114
...contribution methods to maintain diversity, fitness, and selection signatures. Maximum genetic diversity was maintained using marker-by-marker coancestry, and least using genealogical coancestry. Using a measure of coancestry based on shared segments of the genome achieved the best results in terms...
Select this article
LETTER: A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns
- Jinghui Zhang,
- Kent W. Hunter,
- Michael Gandolph,
- William L. Rowe,
- Richard P. Finney,
- Jenny M. Kelley,
- Michael Edmonson,
- and Kenneth H. Buetow
Genome Res. February 2005 15: 241-249; doi:10.1101/gr.2901705
...of genomic sequence in 13 laboratory inbred strains and 12 wild-derived inbred strains. Variation in haplotype block size has also been reported in two recent studies ( Frazer et al 2004 ; Yalcin et al. 2004 ) based on analyses of ∼5 Mb of fine-resolution haplotype structure across multiple strains...
Select this article
Research: Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps
- Beth L. Dumont,
- Michael A. White,
- Brian Steffy,
- Tim Wiltshire,
- and Bret A. Payseur
Genome Res. January 2011 21: 114-125; Published in Advance October 26, 2010, doi:10.1101/gr.111252.110
...divergence Genomic sequence features, including GC content, repetitive elements, and gene density, correlatewith variation in recombination rate across single s (Kong et al. 2002; Jensen-Seaman et al. 2004; Myers et al. 2005; Shifman et al. 2006). The well-curated sequence of the house mouse, combined...
Select this article
Research: A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids
- Bridgett M. vonHoldt,
- John P. Pollinger,
- Dent A. Earl,
- James C. Knowles,
- Adam R. Boyko,
- Heidi Parker,
- Eli Geffen,
- Malgorzata Pilot,
- Wlodzimierz Jedrzejewski,
- Bogumila Jedrzejewska,
- Vadim Sidorovich,
- Claudia Greco,
- Ettore Randi,
- Marco Musiani,
- Roland Kays,
- Carlos D. Bustamante,
- Elaine A. Ostrander,
- John Novembre,
- and Robert K. Wayne
Genome Res. August 2011 21: 1294-1305; Published in Advance May 12, 2011, doi:10.1101/gr.116301.110
...ancestrally inbred populations (Boyko et al. 2010). The Isle Royale National Park and Mexican wolves had the highest fraction of autozygous segments across all fragment sizes, as well as the highest r20.5 (Fig. 5). The red wolf had elevated ROH relative to the outbred gray wolf and coyote populations; however...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Frazer et al. 14 (8): 1493.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: