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Research: Dynamic A-to-I RNA editing in response to gut microbiome in honeybees
- Yuange Duan,
- Min Huang,
- Lin Ye,
- Ling Ma,
- Yashuai Wu,
- Yating Du,
- Jiyao Liu,
- Fan Song,
- Li Tian,
- Wanzhi Cai,
- Hu Li,
- Xin Zhou,
- and Shiqi Luo
Genome Res. March 4, 2026 ; Published in Advance March 4, 2026, doi:10.1101/gr.280291.124
...://creativecommons.org/licenses/by-nc/4.0/. Research 36:1–13 Published by Cold Spring Harbor Laboratory Press; ISSN 1088-9051/26; www..org Genome Research 1 www..org microbiota (Guo et al. 2023; Luo et al. 2024). Newly emerged adult worker bees contain almost no gut bacteria and acquire the gut microbes through feeding, contact...
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Resource: The fine-scale recombination rate variation and associations with genomic features in a butterfly
- Aleix Palahí i Torres,
- Lars Höök,
- Karin Näsvall,
- Daria Shipilina,
- Christer Wiklund,
- Roger Vila,
- Peter Pruisscher,
- and Niclas Backström
Genome Res. May 2023 33: 810-823; Published in Advance June 12, 2023, doi:10.1101/gr.277414.122
...and the density of different classes of transposable elements, most notably a significant enrichment of short interspersed nucleotide elements in genomic regions with higher recombination rate. Finally, the analyses unveiled significant enrichment of genes involved in farnesyltranstransferase activity...
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Resource: Honey bee protein atlas at organ-level resolution
- Queenie W.T. Chan,
- Man Yi Chan,
- Michelle Logan,
- Yuan Fang,
- Heather Higo,
- and Leonard J. Foster
Genome Res. November 2013 23: 1951-1960; Published in Advance July 22, 2013, doi:10.1101/gr.155994.113
...; (*) P < 0.05, (**) P < 0.01. Honey Bee Protein Expression Atlas Genome Research 1955 www..org organism, likely because no comprehensive assessment of gene expression across organs has been attempted. The relationships among organs shown in Figure 7A is obviously correlated to their individual functions...
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Review: Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences
- Terence Gall-Duncan,
- Nozomu Sato,
- Ryan K.C. Yuen,
- and Christopher E. Pearson
Genome Res. January 2022 32: 1-27; Published in Advance December 29, 2021, doi:10.1101/gr.269530.120
...Terence Gall-Duncan1,2,3, Nozomu Sato1,3, Ryan K.C. Yuen1,2 and Christopher E. Pearson1,2 1Program of Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario M5G 1L7, Canada; 2Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada ↵3...
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Research: Unexpectedly low recombination rates and presence of hotspots in termite genomes
- Turid Everitt,
- Tilman Rönneburg,
- Daniel Elsner,
- Anna Olsson,
- Yuanzhen Liu,
- Tuuli Larva,
- Judith Korb,
- and Matthew T. Webster
Genome Res. May 2025 35: 1124-1137; Published in Advance March 20, 2025, doi:10.1101/gr.279180.124
...insects (Wilfert et al. 2007; Stapley et al. 2017). However, until now, the recombination rate has only been studied in social insects from the order Hymenoptera, to which the majority of social insects belong. Among Hymenoptera, the highest rates are found in the genus Apis: the Western honey bee Apis...
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Resource: The genomic architecture and molecular evolution of ant odorant receptors
- Sean K. McKenzie and
- Daniel J.C. Kronauer
Genome Res. November 2018 28: 1757-1765; Published in Advance September 24, 2018, doi:10.1101/gr.237123.118
.... 1): i152–i158. ↵Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, et al. 2014. Finding the missing honey bee genes: lessons learned from a upgrade. BMC Genomics 15: 86. ↵English AC, Richards S, Han Y, Wang M, Vee V, Qu J, Qin X, Muzny DM...
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LETTER: A highly divergent gene cluster in honey bees encodes a novel silk family
- Tara D. Sutherland,
- Peter M. Campbell,
- Sarah Weisman,
- Holly E. Trueman,
- Alagacone Sriskantha,
- Wolfgang J. Wanjura,
- and Victoria S. Haritos
Genome Res. November 2006 16: 1414-1421; Published in Advance October 25, 2006, doi:10.1101/gr.5052606
...and proteomic techniques to identify four honey bee fiber genes ( AmelFibroin 1–4) and two silk-associated genes ( AmelSA 1 and 2). The four fiber genes are small, comprise a single exon each, and are clustered on a short genomic region where the open reading frames are GC-rich amid low GC intergenic regions...
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Research: Causes and consequences of a complex recombinational landscape in the ant Cardiocondyla obscurior
- Mohammed Errbii,
- Jürgen Gadau,
- Kerstin Becker,
- Lukas Schrader,
- and Jan Oettler
Genome Res. June 2024 34: 863-876; Published in Advance June 5, 2024, doi:10.1101/gr.278392.123
...than those of the honey bee (Beye et al. 2006; Shi et al. 2013; Liu et al. 2015; Rueppell et al. 2016).Recombination rate varied considerably among the 29 LGs (Table 1) with LGs <5 Mb having a higher recombination rate (median = 14.2 cM/Mb, 95% CI [8.52, 18.06]) compared with LGs >10 Mb (median = 7.5 c...
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LETTER: Evolution of the complementary sex-determination gene of honey bees: Balancing selection and trans-species polymorphisms
- Soochin Cho,
- Zachary Y. Huang,
- Daniel R. Green,
- Deborah R. Smith,
- and Jianzhi Zhang
Genome Res. November 2006 16: 1366-1375; Published in Advance October 25, 2006, doi:10.1101/gr.4695306
...66045, USA Abstract The mechanism of sex determination varies substantively among evolutionary lineages. One important mode of genetic sex determination is haplodiploidy, which is used by ∼20% of all animal species, including &gt;200,000 species of the entire insect order Hymenoptera. In the honey bee...
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LETTER: Evolution of the Yellow/Major Royal Jelly Protein family and the emergence of social behavior in honey bees
- Mark David Drapeau,
- Stefan Albert,
- Robert Kucharski,
- Carsten Prusko,
- and Ryszard Maleszka
Genome Res. November 2006 16: 1385-1394; Published in Advance October 25, 2006, doi:10.1101/gr.5012006
...the genomic region containing the genes encoding MRJPs. We describe the molecular evolution of these protein families. We then characterize developmental-stage-specific, sex-specific, and caste-specific expression patterns of the mrjp and yellow genes in the honey bee. We review empirical evidence concerning...
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