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Research: Genome-wide chromatin interaction profiling reveals a vital role of super-enhancers and rearrangements in host enhancer contacts during BmNPV infection
- Shudi Zhao,
- Yuedong Li,
- Guanping Chen,
- Xingyang Wang,
- Nan Chen,
- and Xiaofeng Wu
Genome Res. November 2023 33: 1958-1974; Published in Advance October 23, 2023, doi:10.1101/gr.277931.123
...and conserved changes contribute to converting the host intranuclear environment to a suitable circumstance for efficient viral replication and transcription. However, how these alterations of chromatin state affect gene expression and infection progression remains poorly explored. Therefore, it is fundamental...
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Letter: The dynamic DNA methylomes of double-stranded DNA viruses associated with human cancer
- Agustin F. Fernandez,
- Cecilia Rosales,
- Pilar Lopez-Nieva,
- Osvaldo Graña,
- Esteban Ballestar,
- Santiago Ropero,
- Jesus Espada,
- Sonia A. Melo,
- Amaia Lujambio,
- Mario F. Fraga,
- Irene Pino,
- Biola Javierre,
- Francisco J. Carmona,
- Francesco Acquadro,
- Renske D.M. Steenbergen,
- Peter J.F. Snijders,
- Chris J. Meijer,
- Pascal Pineau,
- Anne Dejean,
- Belen Lloveras,
- Gabriel Capella,
- Josep Quer,
- Maria Buti,
- Juan-Ignacio Esteban,
- Helena Allende,
- Francisco Rodriguez-Frias,
- Xavier Castellsague,
- Janos Minarovits,
- Jordi Ponce,
- Daniela Capello,
- Gianluca Gaidano,
- Juan Cruz Cigudosa,
- Gonzalo Gomez-Lopez,
- David G. Pisano,
- Alfonso Valencia,
- Miguel Angel Piris,
- Francesc X. Bosch,
- Ellen Cahir-McFarland,
- Elliott Kieff,
- and Manel Esteller
Genome Res. March 2009 19: 438-451; Published in Advance February 10, 2009, doi:10.1101/gr.083550.108
.... In vitro methylated DNA (IVD) is shown as a positive control. The dynamic changes experienced by the viral DNA methylome during the tumorigenic process were highlighted when we studied cultured primary human foreskin keratinocytes transfected with the entire of HPV16 that integrates in the host...
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Research: Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy
- Dhanur P. Iyer,
- Lambert Moyon,
- Lars Wittler,
- Chieh-Yu Cheng,
- Francisca R. Ringeling,
- Stefan Canzar,
- Annalisa Marsico,
- and Aydan Bulut-Karslioğlu
Genome Res. April 2024 34: 572-589; Published in Advance May 6, 2024, doi:10.1101/gr.278662.123
...entry during diapause (Iyer et al. 2023; van der Weijden et al. 2024). We have shown that immediate targets downstream from MTOR such as translation are inhibited first, followed by chromatin reorganization and a metabolic shift to lipid usage. Still, our understanding of the molecular regulation...
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Research: Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization
- Kasper D. Hansen,
- Sarven Sabunciyan,
- Ben Langmead,
- Noemi Nagy,
- Rebecca Curley,
- Georg Klein,
- Eva Klein,
- Daniel Salamon,
- and Andrew P. Feinberg
Genome Res. February 2014 24: 177-184; Published in Advance September 25, 2013, doi:10.1101/gr.157743.113
...by these proteins have been described (Kieff and Rickinson 2007), the process of EBV-induced immortalization is still not well understood. Several observations, however, suggested that the epigenetic reprogramming of the host by viral products may play a central role in the process of immortalization (Niller et al...
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