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PERSPECTIVE: Genomics of the future: Identification of quantitative trait loci in the mouse
- Lorraine Flaherty,
- Bruce Herron,
- and Derek Symula
Genome Res. December 2005 15: 1741-1745; doi:10.1101/gr.3841405
.... Genetic dissection of a behavioral quantitative trait locus shows that Rgs2 modulates anxiety in mice. Nat. Genet. 36 : 1197 -1202. Web site references ↵ http://www.pubmed.com ; PubMed. ↵ http://www.genenetwork.org/home ; A set of linked resources for systems genetics. ↵ http...
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RESOURCE: A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: The NIH heterogeneous stock
- Martina Johannesson,
- Regina Lopez-Aumatell,
- Pernilla Stridh,
- Margarita Diez,
- Jonatan Tuncel,
- Gloria Blázquez,
- Esther Martinez-Membrives,
- Toni Cañete,
- Elia Vicens-Costa,
- Delyth Graham,
- Richard R. Copley,
- Polinka Hernandez-Pliego,
- Amennai D. Beyeen,
- Johan Öckinger,
- Cristina Fernández-Santamaría,
- Percio S. Gulko,
- Max Brenner,
- Adolf Tobeña,
- Marc Guitart-Masip,
- Lydia Giménez-Llort,
- Anna Dominiczak,
- Rikard Holmdahl,
- Dominique Gauguier,
- Tomas Olsson,
- Richard Mott,
- William Valdar,
- Eva E. Redei,
- Alberto Fernández-Teruel,
- and Jonathan Flint
Genome Res. January 2009 19: 150-158; Published in Advance October 29, 2008, doi:10.1101/gr.081497.108
.... , Bhomra, A. , Nicod, A. , Mott, R. , et al. ( 2002 ) A quantitative trait locus influencing anxiety in the laboratory rat . Genome Res. 12 : 618 – 626 . ↵ Flint, J. , Valdar, W. , Shifman, S. , Mott, R. ( 2005 ) Strategies for mapping and cloning quantitative trait genes in rodents . Nat. Rev. Genet. 6...
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Perspective: Genetic architecture of quantitative traits in mice, flies, and humans
- Jonathan Flint and
- Trudy F.C. Mackay
Genome Res. May 2009 19: 723-733; doi:10.1101/gr.086660.108
...of the genetic architecture of quantitative phenotypes (Shao et al. 2008). CSS studies of 90 traits in a mouse panel and 54 traits in a rat panel identified multiple QTLs for each phenotype (Shao et al. 2008). The average Table 1. Percentage of abnormal phenotypes (at P < 0.05) for 250 mouse knockouts Phenotype...
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PERSPECTIVE: Impact of genomics on research in the rat
- Jozef Lazar,
- Carol Moreno,
- Howard J. Jacob,
- and Anne E. Kwitek
Genome Res. December 2005 15: 1717-1728; doi:10.1101/gr.3744005
...numbers of genetic studies. From 1966, when PubMed started its coverage of the literature, there were 9657 genetic papers that include rat. Since 1991, when the first quantitative trait locus (QTL) was mapped in the rat ( Hilbert et al. 1991 ; Jacob et al. 1991 ), there have been 26,064 papers published...
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Review: Contrasting genetic architectures in different mouse reference populations used for studying complex traits
- David A. Buchner and
- Joseph H. Nadeau
Genome Res. June 2015 25: 775-791; Published in Advance May 7, 2015, doi:10.1101/gr.187450.114
.... This is illustrated by the impact of locus heterogeneity, which reflects the number of different genes that influence a trait or disease, on GWAS for height and age-related macular degeneration. A GWAS of 2172 individuals to detect susceptibility loci for age-related macular degeneration identified five QTLs...
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Research: Genetic analysis in the Collaborative Cross breeding population
- Vivek M. Philip,
- Greta Sokoloff,
- Cheryl L. Ackert-Bicknell,
- Martin Striz,
- Lisa Branstetter,
- Melissa A. Beckmann,
- Jason S. Spence,
- Barbara L. Jackson,
- Leslie D. Galloway,
- Paul Barker,
- Ann M. Wymore,
- Patricia R. Hunsicker,
- David C. Durtschi,
- Ginger S. Shaw,
- Sarah Shinpock,
- Kenneth F. Manly,
- Darla R. Miller,
- Kevin D. Donohue,
- Cymbeline T. Culiat,
- Gary A. Churchill,
- William R. Lariviere,
- Abraham A. Palmer,
- Bruce F. O'Hara,
- Brynn H. Voy,
- and Elissa J. Chesler
Genome Res. August 2011 21: 1223-1238; Published in Advance July 6, 2011, doi:10.1101/gr.113886.110
..., and behavioral traits. However, their breeding history can greatly influence the resulting population, the breadth and extent of phenotypic diversity, and the mapping precision of the resulting cross. There has been heightened interest in these populations with the advent of systems genetics (Chesler et al. 2003...
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ARTICLE: Identification of Multiple Genetic Loci Linked to the Propensity for “Behavioral Despair” in Mice
- Takeo Yoshikawa,
- Akiko Watanabe,
- Yuichi Ishitsuka,
- Akihiro Nakaya,
- and Noriaki Nakatani
Genome Res. March 1, 2002 12: 357-366; doi:10.1101/gr.222602
...for the TST. The quantitative trait loci (QTL) on chromosomes 8 and 11 overlap between the two behavioral measures. Genome-wide interaction analysis, which was developed to identify locus pairs that may contribute epistatically to a phenotype, detected two pairs of chromosomal loci for the TST. The QTL...
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Research: Restless Legs Syndrome-associated intronic common variant in Meis1 alters enhancer function in the developing telencephalon
- Derek Spieler,
- Maria Kaffe,
- Franziska Knauf,
- José Bessa,
- Juan J. Tena,
- Florian Giesert,
- Barbara Schormair,
- Erik Tilch,
- Heekyoung Lee,
- Marion Horsch,
- Darina Czamara,
- Nazanin Karbalai,
- Christine von Toerne,
- Melanie Waldenberger,
- Christian Gieger,
- Peter Lichtner,
- Melina Claussnitzer,
- Ronald Naumann,
- Bertram Müller-Myhsok,
- Miguel Torres,
- Lillian Garrett,
- Jan Rozman,
- Martin Klingenspor,
- Valérie Gailus-Durner,
- Helmut Fuchs,
- Martin Hrabě de Angelis,
- Johannes Beckers,
- Sabine M. Hölter,
- Thomas Meitinger,
- Stefanie M. Hauck,
- Helmut Laumen,
- Wolfgang Wurst,
- Fernando Casares,
- Jose Luis Gómez-Skarmeta,
- and Juliane Winkelmann
Genome Res. April 2014 24: 592-603; Published in Advance March 18, 2014, doi:10.1101/gr.166751.113
...and the of the rat, human, frog, zebrafish, and Fugu; (2) corresponding localization of the human RLS-SNPs rs12469063 (violet diamond) and rs2300478 (red circle); (3) seven analyzed HCNRs in turquoise boxes; (4) the conservation in mammals (dark blue); (5) DNA binding of EP300 (ChIP-seq) in E11.5 forebrain (blue...
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Research: Single-cell transcriptomes identify human islet cell signatures and reveal cell-type–specific expression changes in type 2 diabetes
- Nathan Lawlor,
- Joshy George,
- Mohan Bolisetty,
- Romy Kursawe,
- Lili Sun,
- V. Sivakamasundari,
- Ina Kycia,
- Paul Robson,
- and Michael L. Stitzel
Genome Res. February 2017 27: 208-222; Published in Advance November 18, 2016, doi:10.1101/gr.212720.116
...disorders, particularly CHI. We also investigated cell type expression patterns of 536 islet expression quantitative trait loci (eQTL) target genes (Lyssenko et al. 2009; Dupuis et al. 2010; Dayeh et al. 2013; Fadista et al. 2014; Kulzer et al. 2014; van de Bunt et al. 2015). The majority of these genes (n...
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Method: A metabolomic and systems biology perspective on the brain of the Fragile X syndrome mouse model
- Laetitia Davidovic,
- Vincent Navratil,
- Carmela M. Bonaccorso,
- Maria Vincenza Catania,
- Barbara Bardoni,
- and Marc-Emmanuel Dumas
Genome Res. December 2011 21: 2190-2202; Published in Advance September 7, 2011, doi:10.1101/gr.116764.110
...inactivation in animal models of human diseases, in metabolic Quantitative Trait Locus (mQTL) mapping (Dumas et al. 2007) studies or in metabolic -wide association studies (Illig et al. 2010). Mapping metabolic biomarkers onto biological networks enhances the understanding of complexmetabolic signatures...

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