Searching journal content for articles similar to Fedorov et al. 13 (6a): 1155.

Displaying results 1-6 of 6

For checked items

view abstracts
download to citation manager

Select this article
Method: Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
- Jakob Skou Pedersen,
- Eivind Valen,
- Amhed M. Vargas Velazquez,
- Brian J. Parker,
- Morten Rasmussen,
- Stinus Lindgreen,
- Berit Lilje,
- Desmond J. Tobin,
- Theresa K. Kelly,
- Søren Vang,
- Robin Andersson,
- Peter A. Jones,
- Cindi A. Hoover,
- Alexei Tikhonov,
- Egor Prokhortchouk,
- Edward M. Rubin,
- Albin Sandelin,
- M. Thomas P. Gilbert,
- Anders Krogh,
- Eske Willerslev,
- and Ludovic Orlando
Genome Res. March 2014 24: 454-466; Published in Advance December 3, 2013, doi:10.1101/gr.163592.113
...nucleosome map and methylation levels were confirmed by the recovery of the expected signals at promoter regions, exon/intron boundaries, and CTCF sites. The top-scoring nucleosome calls revealed distinct DNA positioning biases, attesting to nucleotide-level accuracy. The ancient methylation levels exhibited...
OPEN ACCESS ARTICLE
Select this article
Research: Transposon wave remodeled the epigenomic landscape in the rapid evolution of X-Chromosome dosage compensation
- David C.H. Metzger,
- Imogen Porter,
- Brendan Mobley,
- Benjamin A. Sandkam,
- Lydia J.M. Fong,
- Andrew P. Anderson,
- and Judith E. Mank
Genome Res. November 2023 33: 1917-1931; Published in Advance November 21, 2023, doi:10.1101/gr.278127.123
...adaptations to Y Chromosome degeneration can arise de novo, as the sex chromosomes of model systems are ancient, making it difficult to extrapolate the initial stages in the evolution of dosage compensation and obscuring cause from consequence.A classic model of sex chromosome degeneration proposes loss...
Select this article
Research: Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks
- Marta Farré,
- Jaebum Kim,
- Anastasia A. Proskuryakova,
- Yang Zhang,
- Anastasia I. Kulemzina,
- Qiye Li,
- Yang Zhou,
- Yingqi Xiong,
- Jennifer L. Johnson,
- Polina L. Perelman,
- Warren E. Johnson,
- Wesley C. Warren,
- Anna V. Kukekova,
- Guojie Zhang,
- Stephen J. O'Brien,
- Oliver A. Ryder,
- Alexander S. Graphodatsky,
- Jian Ma,
- Harris A. Lewin,
- and Denis M. Larkin
Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118
...a significantly stronger influence on gene expression correlation than older 25 TF motif enhancers found near ruminant ancestral EBRs, containing significantly fewer TFBSs for the 25 TFs. This implies that an introduction of novel TFBSs in evolution might affect gene expression -wide, but genes in/near lineage...
Select this article
Research: The life history of retrocopies illuminates the evolution of new mammalian genes
- Francesco Nicola Carelli,
- Takashi Hayakawa,
- Yasuhiro Go,
- Hiroo Imai,
- Maria Warnefors,
- and Henrik Kaessmann
Genome Res. March 2016 26: 301-314; Published in Advance January 4, 2016, doi:10.1101/gr.198473.115
...expressed retrocopies show lower expression than protein-coding genes (Fig. 1C; Supplemental Fig. S3; Supplemental Data), while transcriptional profiles of platypus and chicken retrocopies are similar to those of protein-coding genes (Fig. 1C; Supplemental Fig. S3), likely due to their more ancient origin...
Select this article
PERSPECTIVE: The opossum genome: Insights and opportunities from an alternative mammal
- Paul B. Samollow
Genome Res. August 2008 18: 1199-1215; doi:10.1101/gr.065326.107
...al. 2003 ) rather than ancestral to prototherians (sensu Luo et al. 2002 ). Considering the disputed and dubious phylogenetic position of A. mahabo , it seems prudent to abide by the older dates for the earliest mammalian divergences (see main text), which are supported by considerable molecular...
Select this article
REVIEW: Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health
- Victoria P. Belancio,
- Dale J. Hedges,
- and Prescott Deininger
Genome Res. March 2008 18: 343-358; Published in Advance February 6, 2008, doi:10.1101/gr.5558208
...of portions of ancient SINE insertions both in noncoding and coding regions of the ( Bejerano et al. 2006 ; Kamal et al. 2006 ; Nishihara et al. 2006 ). In one notable instance, a B2 SINE element was found to serve as a boundary element for transcriptional regulation during organogenesis ( Lunyak et al. 2007...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Fedorov et al. 13 (6a): 1155.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: