Searching journal content for articles similar to Feber et al. 21 (4): 515.

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  1. Research: Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer
    • Jung H. Kim,
    • Saravana M. Dhanasekaran,
    • John R. Prensner,
    • Xuhong Cao,
    • Daniel Robinson,
    • Shanker Kalyana-Sundaram,
    • Christina Huang,
    • Sunita Shankar,
    • Xiaojun Jing,
    • Matthew Iyer,
    • Ming Hu,
    • Lee Sam,
    • Catherine Grasso,
    • Christopher A. Maher,
    • Nallasivam Palanisamy,
    • Rohit Mehra,
    • Hal D. Kominsky,
    • Javed Siddiqui,
    • Jindan Yu,
    • Zhaohui S. Qin,
    • and Arul M. Chinnaiyan
    Genome Res. July 2011 21: 1028-1041; doi:10.1101/gr.119347.110
    .... Recent identification ofmethylation changes in repeat elements at specific genomic locations using MeDIP-seq in malignant nerve sheath tumors demonstrated this potential (Feber et al. 2011). On this basis, we find that ETS-negative prostate cancers show decreased levels of LINE-1 methylation when...
  2. Method: Copy-number-aware differential analysis of quantitative DNA sequencing data
    • Mark D. Robinson,
    • Dario Strbenac,
    • Clare Stirzaker,
    • Aaron L. Statham,
    • Jenny Song,
    • Terence P. Speed,
    • and Susan J. Clark
    Genome Res. December 2012 22: 2489-2496; Published in Advance August 9, 2012, doi:10.1101/gr.139055.112
    ...AC, Stupka E, et al. 2011. Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors. Genome Res 21: 515–524. Greenman CD, Bignell G, Butler A, Edkins S, Hinton J, Beare D, Swamy S, Santarius T, Chen L, Widaa S, et al. 2010. PICNIC: An algorithm to predict absolute allelic...
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