Searching journal content for articles similar to Farahbod and Pavlidis 30 (6): 849.

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  1. Research: Mapping multitissue regulatory variants reveals a liver-centric coexpression network associated with duck egg-laying performance
    • Yang Xi,
    • Jingjing Qi,
    • Zhao Yang,
    • Yutian Zeng,
    • Huicong Zhang,
    • Qiuyu Tao,
    • Mengru Xu,
    • Anqi Huang,
    • Shenqiang Hu,
    • Chunchun Han,
    • Lili Bai,
    • Jiwei Hu,
    • Jiwen Wang,
    • Liang Li,
    • Lingzhao Fang,
    • and Hehe Liu
    Genome Res. October 2025 35: 2211-2225; Published in Advance September 10, 2025, doi:10.1101/gr.280345.124
    ...offers a powerful route to untangle this complexity, comprehensive data sets in ducks remain scarce. Meanwhile, the contributions of peripheral systems beyond neuroendocrine regulation on poultry egg production are still largely unexplored. Here, we generate 979 RNA-seq samples from the liver, ovary...
  2. Method: A general framework for identifying oligogenic combinations of rare variants in complex disorders
    • Vijay Kumar Pounraja and
    • Santhosh Girirajan
    Genome Res. May 2022 32: 904-915; Published in Advance March 17, 2022, doi:10.1101/gr.276348.121
    ...a key component of missing heritability and provides a novel paradigm to untangle the genetic architecture of complex disorders.Recent human population growth has led to a rapid increase in the load of rare variants affecting functionally important regions of the (Coventry et al. 2010; Keinan and Clark...
  3. Research: Genetic, epigenetic, and environmental mechanisms govern allele-specific gene expression
    • Celine L. St. Pierre,
    • Juan F. Macias-Velasco,
    • Jessica P. Wayhart,
    • Li Yin,
    • Clay F. Semenkovich,
    • and Heather A. Lawson
    Genome Res. June 2022 32: 1042-1057; Published in Advance May 2, 2022, doi:10.1101/gr.276193.121
    ...studies and highlighted how this orthogonal approach can prioritize candidate genes. Untangling the genetic, epigenetic, and environmental mechanisms that govern allele-specific gene regulation is crucial to improving our ability to predict phenotypes from genotypes.ResultsPartitioning allele...
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  4. Methods: A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae
    • Allegra A. Petti and
    • George M. Church
    Genome Res. September 2005 15: 1298-1306; Published in Advance August 18, 2005, doi:10.1101/gr.3847105
    ...of connectivity may be different if different sets of expression data are used.) This suggests a control hierarchy in which these basic processes are central to the orchestration of cellular behavior. In related work, however, it has been shown that many functional modules that are coexpressed in S. cerevisiae...
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