Searching journal content for articles similar to Fafard-Couture et al. 33 (4): 525.

Displaying results 1-10 of 6194

For checked items

view abstracts
download to citation manager

Select this article
Research: Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility
- Dongying Xie,
- Pohao Ye,
- Yiming Ma,
- and Zhongying Zhao
Genome Res. March 2026 36: 506-521; Published in Advance February 17, 2026, doi:10.1101/gr.280885.125
...to be located on the autosomal arms, whereas conserved ones are predominantly found in the centers (Rockman and Kruglyak 2009). To determine whether the enriched ubiquitin-ligase-adaptor genes show any chromosomal distribution bias, we analyzed their genomic locations across C. nigoni strains. Although...
Select this article
Research: Transposable elements contribute to the evolution of host shift–related genes in cactophilic Drosophila species
- Daniel Siqueira de Oliveira,
- Anaïs Larue,
- William Vilas Boas Nunes,
- Francois Sabot,
- Alejandra Bodelón,
- María Pilar García Guerreiro,
- Cristina Vieira,
- and Claudia Marcia Aparecida Carareto
Genome Res. March 2026 36: 487-505; Published in Advance February 10, 2026, doi:10.1101/gr.280463.125
...and losing their transposition ability (Fedoroff 2012). Despite the majority of TEs becoming silenced, the remaining TE sequences may still contain regulatory motifs or protein domains (Capy 2021). These sequences can be co-opted by the cell machinery, modifying gene expression or protein sequences...
Select this article
Method: Gene duplication is associated with gene diversification and potential neofunctionalization in lung cancer evolution
- Paul Ashford,
- Alexander M. Frankell,
- Zofia Piszka,
- Camilla S.M. Pang,
- Mahnaz Abbasian,
- Maise Al Bakir,
- Mariam Jamal-Hanjani,
- Nicholas McGranahan,
- Charles Swanton,
- and Christine A. Orengo
Genome Res. March 2026 36: 561-577; Published in Advance February 19, 2026, doi:10.1101/gr.278663.123
..., for example, by point mutations or the addition of extra structural motifs, “embellishments,” to a highly conserved structural core (Dessailly et al. 2010). A majority of the most diverse superfamilies have enzyme functions, and much of the functional variation arises from differences in substrate specificity...
OPEN ACCESS ARTICLE
Select this article
Research: Vertebrates show coordinated elevated expression of mitochondrial and nuclear genes after birth
- Hadar Medini and
- Dan Mishmar
Genome Res. March 2025 35: 459-474; Published in Advance March 4, 2025, doi:10.1101/gr.279700.124
...regulation of mitochondrial–nuclear gene expression (CMNGE) to changing physiological conditions is poorly understood and is limited to certain tissues and organisms. We hypothesized that CMNGE is important for development across vertebrates and, hence, should be conserved. As a first step, we analyzed more...
Select this article
Mini-Review: The paradox of R-loops: guardians of the genome or drivers of disease?
- Shachinthaka D. Dissanayaka Mudiyanselage,
- Phillip Wulfridge,
- and Kavitha Sarma
Genome Res. September 2025 35: 1919-1928; Published in Advance August 6, 2025, doi:10.1101/gr.278992.124
...-loops frequently colocalize with binding sites for the architectural protein CTCF, where they can strengthen the binding of CTCF to its consensus motifs in conjunction with G4 structures that form on the single-stranded component (Luo et al. 2022; Wulfridge et al. 2023). The association between CTCF and G4...
Select this article
Review: A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
- Andrew D. Bates,
- Dawid Grzela,
- Maciej Studzian,
- Louise Brennan,
- Moli Williams,
- Conor Fawcett,
- Beth Hammond,
- Manreen Grewal,
- Marcin Ratajewski,
- Lukasz Pulaski,
- and Urszula L. McClurg
Genome Res. March 2026 36: 433-459; Published in Advance February 17, 2026, doi:10.1101/gr.281154.125
...sequence is functional, the reporter gene is expressed/induced and the cellular concentration of the gene product is measured (Smale 2010).TF binding predictionTFs bind DNA in a sequence-specific manner based on motifs, with each binding site having a consensus sequence that indicates prerequisites...
OPEN ACCESS ARTICLE
Select this article
Resource: Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life
- Nikol Chantzi,
- Akshatha Nayak,
- Fotis A. Baltoumas,
- Eleni Aplakidou,
- Shiau Wei Liew,
- Jesslyn Elvaretta Galuh,
- Michail Patsakis,
- Austin Montgomery,
- Camille Moeckel,
- Ioannis Mouratidis,
- Saiful Arefeen Sazed,
- Wilfried Guiblet,
- Panagiotis Karmiris-Obratański,
- Guliang Wang,
- Apostolos Zaravinos,
- Karen M. Vasquez,
- Chun Kit Kwok,
- Georgios A. Pavlopoulos,
- and Ilias Georgakopoulos-Soares
Genome Res. November 2025 35: 2578-2600; Published in Advance August 26, 2025, doi:10.1101/gr.279790.124
...across the tree of life.Previous studies have shown a correlation between G4 sequence composition in viruses and their hosts (Li et al. 2022). We therefore investigated if the viruses with the highest G4 motif densities also have hosts with a high G4 motif density. Out of the 63,658 viral s that we...
OPEN ACCESS ARTICLE
Select this article
Method: Analysis of coding gene expression from small RNA sequencing
- Aygun Azadova,
- Anthonia Ekperuoh,
- Greg N. Brooke,
- and Antonio Marco
Genome Res. March 2026 36: 611-618; Published in Advance February 10, 2026, doi:10.1101/gr.281364.125
...experimental workflows, making the simultaneous analysis of transcriptomes and small RNAs affordable and efficient.ResultsGene expression changes determined using sRNA-seq data correlate with RNA-seq across a range of human tissuesTo investigate the potential of sRNA-seq for the analysis of protein coding gene...
Select this article
Research: Natural diversity of telomere length distributions across 100 Saccharomyces cerevisiae strains
- Clotilde Garrido,
- Cintia Gómez-Muñoz,
- Etienne Kornobis,
- Nicolas Agier,
- Oana Ilioaia,
- Gilles Fischer,
- and Zhou Xu
Genome Res. March 2026 36: 522-533; Published in Advance January 16, 2026, doi:10.1101/gr.281132.125
...using Telofinder, a script designed to specifically detect the degenerated yeast telomere motif TG1–3/C1–3A (O'Donnell et al. 2023). Finally, after filtering steps ensuring that the telomere sequences are not truncated or internal (Supplemental Fig. S1A), the lengths of all validated telomere sequences...
Select this article
Method: Multisample motif discovery and visualization for tandem repeats
- Yaran Zhang,
- Marc Hulsman,
- Alex Salazar,
- Niccolò Tesi,
- Lydian Knoop,
- Sven van der Lee,
- Sanduni Wijesekera,
- Jana Krizova,
- Erik-Jan Kamsteeg,
- and Henne Holstege
Genome Res. April 2025 35: 850-862; Published in Advance November 13, 2024, doi:10.1101/gr.279278.124
...to a whole TCTA motif loss. This is also evident from the count of different motifs across different reads (Supplemental Fig. 12B). This analysis allows one to assess somatic stability and/or the propensity for technical sequencing errors in a region. Additionally, we randomly selected 8, 15, and 30 reads...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Fafard-Couture et al. 33 (4): 525.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: