Searching journal content for articles similar to Eskin 18 (4): 653.

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  1. Research: Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits
    • Olivia Corradin,
    • Alina Saiakhova,
    • Batool Akhtar-Zaidi,
    • Lois Myeroff,
    • Joseph Willis,
    • Richard Cowper-Sal·lari,
    • Mathieu Lupien,
    • Sanford Markowitz,
    • and Peter C. Scacheri
    Genome Res. January 2014 24: 1-13; Published in Advance November 6, 2013, doi:10.1101/gr.164079.113
    ...Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits Olivia Corradin 1 , Alina Saiakhova 1 , Batool Akhtar-Zaidi 1 , Lois Myeroff 2 , Joseph...
  2. Research: Pronounced inter- and intrachromosomal variation in linkage disequilibrium across the zebra finch genome
    • Jessica Stapley,
    • Tim R. Birkhead,
    • Terry Burke,
    • and Jon Slate
    Genome Res. April 2010 20: 496-502; Published in Advance March 31, 2010, doi:10.1101/gr.102095.109
    ...Pronounced inter- and intrachromosomal variation in linkage disequilibrium across the zebra finch genome Jessica Stapley 1 , Tim R. Birkhead , Terry Burke and Jon Slate Department of Animal and Plant Sciences, University of Sheffield...
  3. Methods: Genome-wide comparisons of variation in linkage disequilibrium
    • Yik Y. Teo,
    • Andrew E. Fry,
    • Kanishka Bhattacharya,
    • Kerrin S. Small,
    • Dominic P. Kwiatkowski,
    • and Taane G. Clark
    Genome Res. October 2009 19: 1849-1860; Published in Advance June 18, 2009, doi:10.1101/gr.092189.109
    ...disequilibrium (LD) (de Bakker et al. 2006a). Powerful analytical tools have also utilized the comprehensive information from these databases to increase genomic coverage and fine-map association signals through statistical imputation of untyped genetic variants that exist in the databases (Marchini et al. 2007...
  4. Research: Human population dispersal “Out of Africa” estimated from linkage disequilibrium and allele frequencies of SNPs
    • Brian P. McEvoy,
    • Joseph E. Powell,
    • Michael E. Goddard,
    • and Peter M. Visscher
    Genome Res. June 2011 21: 821-829; Published in Advance April 25, 2011, doi:10.1101/gr.119636.110
    ...Human population dispersal “Out of Africa” estimated from linkage disequilibrium and allele frequencies of SNPs Brian P. McEvoy 1 , 4 , Joseph E. Powell 1 , 4 , 5 , Michael E. Goddard 2 , 3 and Peter M. Visscher 1 1Queensland...
  5. LETTER: Haplotype Information and Linkage Disequilibrium Mapping for Single Nucleotide Polymorphisms
    • Xin Lu,
    • Tianhua Niu,
    • and Jun S. Liu
    Genome Res. September 2003 13: 2112-2117; doi:10.1101/gr.586803
    ...Haplotype Information and Linkage Disequilibrium Mapping for Single Nucleotide Polymorphisms Xin Lu 1 , Tianhua Niu 2 , and Jun S. Liu 1 , 3 1 Department of Statistics, Harvard University, Cambridge, Massachusetts 02138, USA 2...
  6. Method: An efficient method to identify, date, and describe admixture events using haplotype information
    • Pongsakorn Wangkumhang,
    • Matthew Greenfield,
    • and Garrett Hellenthal
    Genome Res. August 2022 32: 1553-1564; Published in Advance July 6, 2022, doi:10.1101/gr.275994.121
    ...homogeneous populations.In recent years, numerous techniques have emerged that exploit expected patterns of linkage disequilibrium (LD) among single-nucleotide-polymorphisms (SNPs) in admixed populations that descend from the intermixing of multiple ancestral sources in order to identify, describe, and date...
    OPEN ACCESS ARTICLE
  7. LETTER: Haplotype and Linkage Disequilibrium Architecture for Human Cancer-Associated Genes
    • Penelope E. Bonnen,
    • Peggy J. Wang,
    • Marek Kimmel,
    • Ranajit Chakraborty,
    • and David L. Nelson
    Genome Res. December 1, 2002 12: 1846-1853; Published in Advance November 12, 2002, doi:10.1101/gr.483802
    ...Haplotype and Linkage Disequilibrium Architecture for Human Cancer-Associated Genes Penelope E. Bonnen 1 , Peggy J. Wang 1 , Marek Kimmel 2 , Ranajit Chakraborty 3 , and David L. Nelson 1 , 4 1Department of Molecular...
  8. METHODS: Bayesian Analysis of Haplotypes for Linkage Disequilibrium Mapping
    • Jun S. Liu,
    • Chiara Sabatti,
    • Jun Teng,
    • Bronya J.B. Keats,
    • and Neil Risch
    Genome Res. October 1, 2001 11: 1716-1724; doi:10.1101/gr.194801
    ...Bayesian Analysis of Haplotypes for Linkage Disequilibrium Mapping Jun S. Liu 1 , 6 , Chiara Sabatti 2 , Jun Teng 3 , Bronya J.B. Keats 4 , and Neil Risch 5 1Department of Statistics, Harvard University, Cambridge...
  9. METHODS: Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size
    • Ben J. Hayes,
    • Peter M. Visscher,
    • Helen C. McPartlan,
    • and Mike E. Goddard
    Genome Res. April 1, 2003 13: 635-643; Published in Advance March 12, 2003, doi:10.1101/gr.387103
    ..., Australia Abstract Linkage disequilibrium (LD) between densely spaced, polymorphic genetic markers in humans and other species contains information about historical population size. Inferring past population size is of interest both from an evolutionary perspective (e.g., testing the “out of Africa...
  10. Method: Minimizing reference bias with an imputed personalized reference
    • Kavya Vaddadi,
    • Mao-Jan Lin,
    • Sina Majidian,
    • Taher Mun,
    • and Ben Langmead
    Genome Res. March 5, 2026 gr.280989.125; Published in Advance March 5, 2026, doi:10.1101/gr.280989.125
    ...-first alignment” framework that combines advantages of genotype imputation and pan alignment. Recent imputation tools are efficient (Browning et al. 2018; Rubinacci et al. 2021, 2023) and can leverage comprehensive genetic and linkage-disequilibrium information from reference panels like the 1000 Genomes Project...
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