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Method: High-throughput discovery of rare insertions and deletions in large cohorts
- Francesco L.M. Vallania,
- Todd E. Druley,
- Enrique Ramos,
- Jue Wang,
- Ingrid Borecki,
- Michael Province,
- and Robi D. Mitra
Genome Res. December 2010 20: 1711-1718; Published in Advance November 1, 2010, doi:10.1101/gr.109157.110
...Methods 6: 263– 265. Erlich Y, Chang K, Gordon A, Ronen R, Navon O, Rooks M, Hannon GJ. 2009. DNA Sudoku–harnessing high-throughput sequencing for multiplexed specimen analysis. Genome Res 19: 1243–1253. Fearnhead NS, Wilding JL, Winney B, Tonks S, Bartlett S, Bicknell DC, Tomlinson IP,MortensenNJ, Bodmer...
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Method: In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
- Andrew Adey,
- Jacob O. Kitzman,
- Joshua N. Burton,
- Riza Daza,
- Akash Kumar,
- Lena Christiansen,
- Mostafa Ronaghi,
- Sasan Amini,
- Kevin L. Gunderson,
- Frank J. Steemers,
- and Jay Shendure
Genome Res. December 2014 24: 2041-2049; Published in Advance October 19, 2014, doi:10.1101/gr.178319.114
...and append universal adaptors in a single enzymatic step (Goryshin and Reznikoff 1998; Adey et al. 2010). In recent years, tagmentation has been applied in diverse ways including DNA-seq (Adey et al. 2010), stranded RNA-seq (Gertz et al. 2012), whole- bisulfite sequencing (Adey and Shendure 2012), chromatin...

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