Searching journal content for articles similar to Emrich et al. 17 (1): 69.

Displaying results 1-6 of 6

For checked items

view abstracts
download to citation manager

Select this article
Resource: Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
- Vincent M. Bruno,
- Zhong Wang,
- Sadie L. Marjani,
- Ghia M. Euskirchen,
- Jeffrey Martin,
- Gavin Sherlock,
- and Michael Snyder
Genome Res. October 2010 20: 1451-1458; Published in Advance September 1, 2010, doi:10.1101/gr.109553.110
..., Yates JR 3rd, Lorenz MC, Gustin MC. 2008. CTA4 transcription factor mediates induction of nitrosative stress response inCandida albicans. Eukaryot Cell 7: 268–278. Emrich SJ, Barbazuk WB, Li L, Schnable PS. 2007. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res 17: 69...
OPEN ACCESS ARTICLE
Select this article
Methods: Gene expression profiling by massively parallel sequencing
- Tatiana Teixeira Torres,
- Muralidhar Metta,
- Birgit Ottenwälder,
- and Christian Schlötterer
Genome Res. January 2008 18: 172-177; Published in Advance November 21, 2007, doi:10.1101/gr.6984908
...– 261 . ↵ Chen, J. , Rattray, M. ( 2006 ) Analysis of tag-position bias in MPSS technology . BMC Genomics 7 : 77 , doi: 10.1186/1471-2164-7-77 . ↵ Emrich, S.J. , Barbazuk, W.B. , Li, L. , Schnable, P.S. ( 2007 ) Gene discovery and annotation using LCM-454 transcriptome sequencing . Genome Res. 17 : 69...
OPEN ACCESS ARTICLE
Select this article
Research: Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
- Ruth A. Swanson-Wagner,
- Steven R. Eichten,
- Sunita Kumari,
- Peter Tiffin,
- Joshua C. Stein,
- Doreen Ware,
- and Nathan M. Springer
Genome Res. December 2010 20: 1689-1699; Published in Advance October 29, 2010, doi:10.1101/gr.109165.110
...to structural variation are not found in the s of other model plants (Arabidopsis, rice, sorghum). These sequences may be novel transposon sequences or novel transcribed sequences that do not encode functional genes.Many of the remaining CNV/PAV genes that did have annotations and/or orthologs are present...
Select this article
Letter: Genome-wide mapping of alternative splicing in Arabidopsis thaliana
- Sergei A. Filichkin,
- Henry D. Priest,
- Scott A. Givan,
- Rongkun Shen,
- Douglas W. Bryant,
- Samuel E. Fox,
- Weng-Keen Wong,
- and Todd C. Mockler
Genome Res. January 2010 20: 45-58; Published in Advance October 26, 2009, doi:10.1101/gr.093302.109
...matches to intergenic regions and annotated gene features, such as introns, coding sequence (CDS), splice junctions (SJs), 59- and 39-untranslated regions (UTRs) by perfect matching microreads is illustrated in Figure 3B. As expected, the depth of coverage of intergenic regions and introns was lower than...
Select this article
Research: Genic and nongenic contributions to natural variation of quantitative traits in maize
- Xianran Li,
- Chengsong Zhu,
- Cheng-Ting Yeh,
- Wei Wu,
- Elizabeth M. Takacs,
- Katherine A. Petsch,
- Feng Tian,
- Guihua Bai,
- Edward S. Buckler,
- Gary J. Muehlbauer,
- Marja C.P. Timmermans,
- Michael J. Scanlon,
- Patrick S. Schnable,
- and Jianming Yu
Genome Res. December 2012 22: 2436-2444; Published in Advance June 14, 2012, doi:10.1101/gr.140277.112
...) in >81% of the NAM founders (i.e., more than 22/27) were used for GWASs (Table 1). As expected based on their mode of discovery from RNA-seq reads, most of these SNPs were located within annotated genes. Of the 289,461 SNPs, 87% were located within 15,097 of the 32,540 FGS genes (46%). Similarly, we...
OPEN ACCESS ARTICLE
Select this article
PERSPECTIVE: Genome-wide analyses of alternative splicing in plants: Opportunities and challenges
- W. Brad Barbazuk,
- Yan Fu,
- and Karen M. McGinnis
Genome Res. September 2008 18: 1381-1392; Published in Advance July 30, 2008, doi:10.1101/gr.053678.106
...gene models during construction. Increasing plant transcriptome sequence collections will be vital to accurately define gene features during annotation, and new high-throughput sequencing tools, such as the 454 Life Sciences (Roche) pyrosequencer, have been applied to both animal ( Bainbridge et al...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Emrich et al. 17 (1): 69.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: