Searching journal content for articles similar to Ellis 10 (7): 895.

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  1. Resource: Complete sequencing of a cynomolgus macaque major histocompatibility complex haplotype
    • Julie A. Karl,
    • Trent M. Prall,
    • Hailey E. Bussan,
    • Joshua M. Varghese,
    • Aparna Pal,
    • Roger W. Wiseman,
    • and David H. O'Connor
    Genome Res. March 2023 33: 448-462; Published in Advance February 28, 2023, doi:10.1101/gr.277429.122
    ...of genes in the MHC region are also likely to be responsible for a number of disease associations, so characterizing allelic variation in these genes is also essential for establishing genotype/phenotype correlations.However, the reference sequences for the MHC of macaques remain inaccurate, especially...
  2. Method: Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair
    • Ryan J. McGinty,
    • Rachel G. Rubinstein,
    • Alexander J. Neil,
    • Margaret Dominska,
    • Denis Kiktev,
    • Thomas D. Petes,
    • and Sergei M. Mirkin
    Genome Res. December 2017 27: 2072-2082; Published in Advance November 7, 2017, doi:10.1101/gr.228148.117
    ...SpotON Flow Cell Mk I R9.4 (FLO-SPOTR9) for 48 h.BioinformaticsRaw current traces generated by ONT sequencing were basecalled via the Albacore basecalling software (ONT version 2.02). For the parent strain, reads were then aligned to the S288C reference (R64-1-1, obtained from https...
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  3. LETTER: Haplotype Structure, LD Blocks, and Uneven Recombination Within the LRP5 Gene
    • Rebecca C.J. Twells,
    • Charles A. Mein,
    • Michael S. Phillips,
    • J. Fred Hess,
    • Riitta Veijola,
    • Matthew Gilbey,
    • Matthew Bright,
    • Michael Metzker,
    • Benedicte A. Lie,
    • Amanda Kingsnorth,
    • Edward Gregory,
    • Yusuke Nakagawa,
    • Hywel Snook,
    • William Y.S. Wang,
    • Jennifer Masters,
    • Gillian Johnson,
    • Iain Eaves,
    • Joanna M.M. Howson,
    • David Clayton,
    • Heather J. Cordell,
    • Sarah Nutland,
    • Helen Rance,
    • Philippa Carr,
    • and John A. Todd
    Genome Res. May 1, 2003 13: 845-855; doi:10.1101/gr.563703
    .../Mb (4882 meioses), in contrast to flanking regions of 14.6 recombinants/Mb. This region of high recombination could be delineated into three to four hot spots, one within a 601-bp interval. For LRP5 , three haplotype blocks were identified, flanked by the hot spots. Each LD block comprised over 80% common...
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