Searching journal content for articles similar to Eichten et al. 26 (11): 1520.

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  1. Research: Evolutionary rewiring of the wheat transcriptional regulatory network by lineage-specific transposable elements
    • Yuyun Zhang,
    • Zijuan Li,
    • Yu'e Zhang,
    • Kande Lin,
    • Yuan Peng,
    • Luhuan Ye,
    • Yili Zhuang,
    • Meiyue Wang,
    • Yilin Xie,
    • Jingyu Guo,
    • Wan Teng,
    • Yiping Tong,
    • Wenli Zhang,
    • Yongbiao Xue,
    • Zhaobo Lang,
    • and Yijing Zhang
    Genome Res. December 2021 31: 2276-2289; Published in Advance September 9, 2021, doi:10.1101/gr.275658.121
    ...expression of TFs and an incubation with a DNA library to probe the specific binding of TFs (Bartlett et al. 2017). The development of DAP-seq has enabled the high-throughput profiling of TF networks. Recent research on Arabidopsis and maize revealed the binding profiles of hundreds of TFs, thereby...
  2. Research: Hidden variation in polyploid wheat drives local adaptation
    • Laura-Jayne Gardiner,
    • Ryan Joynson,
    • Jimmy Omony,
    • Rachel Rusholme-Pilcher,
    • Lisa Olohan,
    • Daniel Lang,
    • Caihong Bai,
    • Malcolm Hawkesford,
    • David Salt,
    • Manuel Spannagl,
    • Klaus F.X. Mayer,
    • John Kenny,
    • Michael Bevan,
    • Neil Hall,
    • and Anthony Hall
    Genome Res. September 2018 28: 1319-1332; Published in Advance August 9, 2018, doi:10.1101/gr.233551.117
    ...are epigenetically controlled and a major contributor to size change in plants (Lee and Kim 2014).View larger version: In this window In a new window Figure 4. Analyzing transposable element methylation profiles across the Watkins collection. (A) Base-space per Watkins accession aligned to DNA...
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  3. Letter: Genome-wide mapping of alternative splicing in Arabidopsis thaliana
    • Sergei A. Filichkin,
    • Henry D. Priest,
    • Scott A. Givan,
    • Rongkun Shen,
    • Douglas W. Bryant,
    • Samuel E. Fox,
    • Weng-Keen Wong,
    • and Todd C. Mockler
    Genome Res. January 2010 20: 45-58; Published in Advance October 26, 2009, doi:10.1101/gr.093302.109
    ...polypeptides are shown schematically with the DNA binding MYB domain shown by a red box. (C ) Gene models of homologous CCA1/LHY loci in A. thaliana, Oryza sativa, Brachypodium distachyon, and Populus trichocarpa. cDNA microread coverage is shown for Arabidopsis and Brachypodium. SJs of intron 4 and 4a...
  4. Research: Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control
    • Todd P. Michael,
    • Evan Ernst,
    • Nolan Hartwick,
    • Philomena Chu,
    • Douglas Bryant,
    • Sarah Gilbert,
    • Stefan Ortleb,
    • Erin L. Baggs,
    • K. Sowjanya Sree,
    • Klaus J. Appenroth,
    • Joerg Fuchs,
    • Florian Jupe,
    • Justin P. Sandoval,
    • Ksenia V. Krasileva,
    • Ljudmylla Borisjuk,
    • Todd C. Mockler,
    • Joseph R. Ecker,
    • Robert A. Martienssen,
    • and Eric Lam
    Genome Res. February 2021 31: 225-238; Published in Advance December 23, 2020, doi:10.1101/gr.266429.120
    ...-trimmed using Trimmomatic followed by aligning to the assembly with Bowtie 2 (v2.3.0) (Langmead and Salzberg 2012) under default parameters. To test completeness, the Waksman Student Scholars Program (WSSP) (https://www.ncbi.nlm.nih.gov/nuccore/?term=Waksman±Student±Scholars±program±wolffia±australiana) cDNA...
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