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Research: Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
- Xin Li,
- San-Gang He,
- Wen-Rong Li,
- Ling-Yun Luo,
- Ze Yan,
- Dong-Xin Mo,
- Xing Wan,
- Feng-Hua Lv,
- Ji Yang,
- Ya-Xi Xu,
- Juan Deng,
- Qiang-Hui Zhu,
- Xing-Long Xie,
- Song-Song Xu,
- Chen-Xi Liu,
- Xin-Rong Peng,
- Bin Han,
- Zhong-Hui Li,
- Lei Chen,
- Jian-Lin Han,
- Xue-Zhi Ding,
- Renqing Dingkao,
- Yue-Feng Chu,
- Jin-Yan Wu,
- Li-Min Wang,
- Ping Zhou,
- Ming-Jun Liu,
- and Meng-Hua Li
Genome Res. September 2022 32: 1669-1684; Published in Advance August 10, 2022, doi:10.1101/gr.276769.122
...molecular basis underlying the genomic recombination and chromosomal evolution.View larger version: In this window In a new window Figure 1. Research framework, hybridization scheme, karyotype and chromosomal painting, statistics of homologs and gene families, phylogenetic tree, and synteny landscape. (A...
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LETTER: High-Resolution Transcript Map of the Region Spanning D12S1629 and D12S312 at Chromosome 12q13: Triple A Syndrome-Linked Region
- Hyoungnam Lee,
- Eunkyung Choi,
- Young Seomun,
- K. Montgomery,
- A. Huebner,
- Eunice Lee,
- Stephanie Lau,
- Choun-Ki Joo,
- R. Kucherlapati,
- and Sung-Joo Kim Yoon
Genome Res. October 1, 2000 10: 1561-1567; doi:10.1101/gr.142100
.... Proc. Natl. Acad. Sci. 87 : 6218 – 6222 . ↵ Takahashi K. , Paladini R.D. , Coulombe P.A. ( 1995 ) Cloning and characterization of multiple human genes and cDNAs encoding highly related type II keratin 6 isoforms. J. Biol. Chem. 270 : 18581 – 18592 . ↵ Visser J.A. , McLuskey A. , van Beers T. , Weghuis...
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LETTER: A Comparative Molecular Analysis of Developing Mouse Forelimbs and Hindlimbs Using Serial Analysis of Gene Expression (SAGE)
- Elliott H. Margulies,
- Sharon L.R. Kardia,
- and Jeffrey W. Innis
Genome Res. October 1, 2001 11: 1686-1698; Published in Advance September 20, 2001, doi:10.1101/gr.192601
...nonprotein-encoding, polyadenylated transcripts (see http://www.ensembl.org/Genesweep for the definition of a “gene”) that are likely included in the count of unique transcripts for SAGE libraries. cDNA sequencing efforts and other experimental annotation strategies capable of mapping SAGE tags to specific...
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LETTER: 1274 Full-Open Reading Frames of Transcripts Expressed in the Developing Mouse Nervous System
- Maria F. Bonaldo,
- Thomas B. Bair,
- Todd E. Scheetz,
- Einat Snir,
- Ike Akabogu,
- Jennifer L. Bair,
- Brian Berger,
- Keith Crouch,
- Aja Davis,
- Mari E. Eyestone,
- Catherine Keppel,
- Tamara A. Kucaba,
- Mark Lebeck,
- Jenny L. Lin,
- Anna I.R. de Melo,
- Joshua Rehmann,
- Rebecca S. Reiter,
- Kelly Schaefer,
- Christina Smith,
- Dylan Tack,
- Kurtis Trout,
- Val C. Sheffield,
- Jim J-C. Lin,
- Thomas L. Casavant,
- and Marcelo B. Soares
Genome Res. October 15, 2004 14: 2053-2063; doi:10.1101/gr.2601304
...://.uiowa.edu/techreports.html ). Selected clones were BLASTed against NCBI's “nr” database and GenBank records of each significant hit (e value &lt; 10-8) were examined to seek homologous genes that had an annotated CDS for additional evidence that might further support or contradict the prediction. A total of 7774 cDNA clones were...
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LETTER: Construction of a Linkage Map of the Medaka (Oryzias latipes) and Mapping of the Da Mutant Locus Defective in Dorsoventral Patterning
- Masato Ohtsuka,
- Satoshi Makino,
- Kinya Yoda,
- Hironori Wada,
- Kiyoshi Naruse,
- Hiroshi Mitani,
- Akihiro Shima,
- Kenjiro Ozato,
- Minoru Kimura,
- and Hidetoshi Inoko
Genome Res. December 1, 1999 9: 1277-1287; doi:10.1101/gr.9.12.1277
...)] from the stage before morphological alteration of the Da mutant first appears. Therefore, mapping of these genes is of great importance, but medaka orthologs of these genes could not be amplified with the degenerate PCR method. Screening of a cDNA library using zebrafish gene fragments as a probe...
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ARTICLE: A Genetic Linkage Map for Zebrafish: Comparative Analysis and Localization of Genes and Expressed Sequences
- Michael A. Gates,
- Lisa Kim,
- Elizabeth S. Egan,
- Timothy Cardozo,
- Howard I. Sirotkin,
- Scott T. Dougan,
- Deval Lashkari,
- Ruben Abagyan,
- Alexander F. Schier,
- and William S. Talbot
Genome Res. April 1, 1999 9: 334-347; doi:10.1101/gr.9.4.334
.... These polymorphisms included 105 SSCPs from fully sequenced cDNAs and ESTs (of which 104 were mapped, see below) that defined previously unmapped genes (Fig. 1 ; Table 1 ). We also developed SSCPs to map 10 sequence-tagged sites (STSs) derived from genomic clones in BAC, PAC, and YAC vectors and other sequences...
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LETTER: Systematic Characterization of the Zinc-Finger-Containing Proteins in the Mouse Transcriptome
- Timothy Ravasi,
- Thomas Huber,
- Mihaela Zavolan,
- Alistair Forrest,
- Terry Gaasterland,
- Sean Grimmond,
- RIKEN GER Group,
- GSL Members,
- and David A. Hume
Genome Res. June 2003 13: 1430-1442; doi:10.1101/gr.949803
...an incomplete and imperfect prediction and description of the full-length transcripts and splice variants that can be transcribed from the . The RIKEN Mouse Gene Encyclopedia Project has provided the most comprehensive collection of full-length mammalian complementary DNAs (cDNAs; Okazaki et al. 2002...

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