Searching journal content for articles similar to Dvinge et al. 29 (10): 1591.

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  1. Research: Alternative splicing generates HER2 isoform diversity underlying antibody–drug conjugate resistance in breast cancer
    • Gabriela D.A. Guardia,
    • Carlos H. dos Anjos,
    • Aline Rangel-Pozzo,
    • Filipe F. dos Santos,
    • Alexander Birbrair,
    • Paula F. Asprino,
    • Anamaria A. Camargo,
    • and Pedro A.F. Galante
    Genome Res. September 2025 35: 1942-1958; Published in Advance July 15, 2025, doi:10.1101/gr.280304.124
    ...to produce multiple distinct mRNA transcripts, increasing protein diversity (Nilsen and Graveley 2010). In humans, >90% of multiexon genes undergo alternative splicing, generating roughly seven mRNA isoforms per gene on average, although only a fraction of these yield functionally distinct proteins (Pan et...
  2. Research: A comprehensive characterization of cis-acting splicing-associated variants in human cancer
    • Yuichi Shiraishi,
    • Keisuke Kataoka,
    • Kenichi Chiba,
    • Ai Okada,
    • Yasunori Kogure,
    • Hiroko Tanaka,
    • Seishi Ogawa,
    • and Satoru Miyano
    Genome Res. August 2018 28: 1111-1125; Published in Advance July 16, 2018, doi:10.1101/gr.231951.117
    ...frameworkThe overview of the proposed framework (SAVNet) is summarized in Figure 1A. First, we collected evidence of abnormal splicing from tumor-derived RNA-seq data. Exon skipping and alternative 5′ SS and 3′ SS usage (defined by RefSeq transcript annotation) were extracted by capturing splicing junctions...
  3. Research: Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
    • Pedro G. Ferreira,
    • Pedro Jares,
    • Daniel Rico,
    • Gonzalo Gómez-López,
    • Alejandra Martínez-Trillos,
    • Neus Villamor,
    • Simone Ecker,
    • Abel González-Pérez,
    • David G. Knowles,
    • Jean Monlong,
    • Rory Johnson,
    • Victor Quesada,
    • Sarah Djebali,
    • Panagiotis Papasaikas,
    • Mónica López-Guerra,
    • Dolors Colomer,
    • Cristina Royo,
    • Maite Cazorla,
    • Magda Pinyol,
    • Guillem Clot,
    • Marta Aymerich,
    • Maria Rozman,
    • Marta Kulis,
    • David Tamborero,
    • Anaïs Gouin,
    • Julie Blanc,
    • Marta Gut,
    • Ivo Gut,
    • Xose S. Puente,
    • David G. Pisano,
    • José Ignacio Martin-Subero,
    • Nuria López-Bigas,
    • Armando López-Guillermo,
    • Alfonso Valencia,
    • Carlos López-Otín,
    • Elías Campo,
    • and Roderic Guigó
    Genome Res. February 2014 24: 212-226; Published in Advance November 21, 2013, doi:10.1101/gr.152132.112
    .... These results suggest that aberrant splicing in SF3B1mutations is in most cases unlikely to lead to functional protein products. In order to further understand the interplay between the splicing machinery and alternative splicing in CLL, we derived a composite cassette exon (CE)/RNA–binding protein (RBP...
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