Searching journal content for articles similar to Dunn et al. 22 (5): 908.

Displaying results 1-10 of 6157

For checked items

view abstracts
download to citation manager

Select this article
Research: Natural diversity of telomere length distributions across 100 Saccharomyces cerevisiae strains
- Clotilde Garrido,
- Cintia Gómez-Muñoz,
- Etienne Kornobis,
- Nicolas Agier,
- Oana Ilioaia,
- Gilles Fischer,
- and Zhou Xu
Genome Res. March 2026 36: 522-533; Published in Advance January 16, 2026, doi:10.1101/gr.281132.125
...environments, a difference partially driven by mitochondrial metabolism. We previously generated telomere-to-telomere assemblies for 142 natural yeast isolates (the “Saccharomyces cerevisiae Reference Assembly Panel,” or ScRAP), which further allowed us to show that TL varies among chromosome extremities...
Select this article
Research: Degrees of convergent evolution in rodent adaptations to arid environments
- Domitille Chalopin,
- Carine Rey,
- Jeremy Ganofsky,
- Juliana Blin,
- Pascale Chevret,
- Marion Mouginot,
- Laurent Guéguen,
- Bastien Boussau,
- Sophie Pantalacci,
- and Marie Sémon
Genome Res. March 2026 36: 472-486; Published in Advance January 21, 2026, doi:10.1101/gr.280089.124
...In a new window Figure 1. Outline of the analysis of convergent adaptation to arid environment in rodents (A), which aims at quantifying convergence at different levels and phylogenetic scales (B). The methods are indicated in gray, and their main purpose is schematized (C). In particular, the EVE model...
OPEN ACCESS ARTICLE
Select this article
Research: A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility
- Angelo A. Ruggieri,
- Luca Livraghi,
- James J. Lewis,
- Elizabeth Evans,
- Francesco Cicconardi,
- Laura Hebberecht,
- Yadira Ortiz-Ruiz,
- Stephen H. Montgomery,
- Alfredo Ghezzi,
- José Arcadio Rodriguez-Martinez,
- Chris D. Jiggins,
- W. Owen McMillan,
- Brian A. Counterman,
- Riccardo Papa,
- and Steven M. Van Belleghem
Genome Res. October 2022 32: 1862-1875; Published in Advance September 15, 2022, doi:10.1101/gr.276839.122
...in 1 bp indels, structural variants (SVs) between 2 and 50 bp, SVs larger than 1000 bp, and SVs characterized as TEs.We next examined if the abundance of SVs across the is similarly affected by linked selection as SNP diversity. In Heliconius, there is a negative relationship between average nucleotide...
Select this article
Research: Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages
- Tracy Jiaye Lee,
- Yu-Ching Liu,
- Wei-An Liu,
- Yu-Fei Lin,
- Hsin-Han Lee,
- Huei-Mien Ke,
- Jen-Pan Huang,
- Mei-Yeh Jade Lu,
- Chia-Lun Hsieh,
- Kuo-Fang Chung,
- Gianni Liti,
- and Isheng Jason Tsai
Genome Res. May 2022 32: 864-877; Published in Advance March 31, 2022, doi:10.1101/gr.276286.121
...diversity sheltered from human influences, making it a powerful model system in microbial ecology.The yeast genus Saccharomyces, which includes S. cerevisiae, is a powerful model system for revealing patterns of genomic variation underlying reproductive isolation and adaptation in eukaryotic microorganisms...
OPEN ACCESS ARTICLE
Select this article
Method: Long-read reconstruction of many diverse haplotypes with devider
- Jim Shaw,
- Christina Boucher,
- Yun William Yu,
- Noelle Noyes,
- and Heng Li
Genome Res. December 2025 35: 2637-2649; Published in Advance September 23, 2025, doi:10.1101/gr.280510.125
...gap-compressed identity against reference) of an intracellular bacterial symbiont community within deep-sea mussels from Ansorge et al. (2019), who predicted 11 strains to be present. Twenty-five candidate single-copy regions with high SNP diversity were haplotyped by devider, iGDA, and RVHaplo...
Select this article
Research: Mapping multitissue regulatory variants reveals a liver-centric coexpression network associated with duck egg-laying performance
- Yang Xi,
- Jingjing Qi,
- Zhao Yang,
- Yutian Zeng,
- Huicong Zhang,
- Qiuyu Tao,
- Mengru Xu,
- Anqi Huang,
- Shenqiang Hu,
- Chunchun Han,
- Lili Bai,
- Jiwei Hu,
- Jiwen Wang,
- Liang Li,
- Lingzhao Fang,
- and Hehe Liu
Genome Res. October 2025 35: 2211-2225; Published in Advance September 10, 2025, doi:10.1101/gr.280345.124
...QTL) mapping, which aims to explore the functional impacts of genomic variants in their native genomic and biological contexts (Aguet et al. 2023). Among different types of molQTL, gene expression QTL (eQTL) have been widely studied, particularly in humans. For example, the Genotype-Tissue Expression (GTEx...
Select this article
Resource: Chromosome-level subgenome-aware de novo assembly provides insight into Saccharomyces bayanus genome divergence after hybridization
- Cory Gardner,
- Junhao Chen,
- Christina Hadfield,
- Zhaolian Lu,
- David Debruin,
- Yu Zhan,
- Maureen J. Donlin,
- Tae-Hyuk Ahn,
- and Zhenguo Lin
Genome Res. November 2024 34: 2133-2146; Published in Advance September 17, 2024, doi:10.1101/gr.279364.124
...and exploration of the unstable subtelomeric regions, which were found to contain industrially relevant genes such as the maltose metabolism genes (MAL) genes (Salazar et al. 2019).Saccharomyces bayanus is another interspecies hybrid yeast commonly found in industrial brewing environments but is viewed...
Select this article
Research: Large haplotypes highlight a complex age structure within the maize pan-genome
- Jianing Liu and
- R. Kelly Dawe
Genome Res. March 2023 33: 359-370; Published in Advance February 28, 2023, doi:10.1101/gr.276705.122
...Our documentation of maize cenhaps (Fig. 2) reveals not only extreme cases of 100–300 kya of divergence between nonrecombining variants, but also a significant amount of divergence in the 10–30 kya range. These divergence times were estimated against a single reference . To gain a broader perspective we also...
Select this article
Research: Copy number variation alters local and global mutational tolerance
- Grace Avecilla,
- Pieter Spealman,
- Julia Matthews,
- Elodie Caudal,
- Joseph Schacherer,
- and David Gresham
Genome Res. August 2023 33: 1340-1353; Published in Advance August 31, 2023, doi:10.1101/gr.277625.122
...of differing sizes and structures. Here, we investigated Saccharomyces cerevisiae (yeast) strains that acquired adaptive CNVs of variable structures and copy numbers following experimental evolution in glutamine-limited chemostats. Although beneficial in the selective environment, CNVs result in decreased...
OPEN ACCESS ARTICLE
Select this article
Research: Meta-analysis of activated neurons reveals dynamic regulation of diverse classes of alternative splicing
- Keegan S. Krick,
- Marissa Maroni,
- Erica Korb,
- Kristen W. Lynch,
- and Elizabeth A. Heller
Genome Res. June 2025 35: 1301-1312; Published in Advance April 24, 2025, doi:10.1101/gr.280082.124
...in neurons is well established, yet few studies have examined activity-dependent alternative splicing. Alternative splicing regulates >95% of genes and is essential to diverse neuronal functions, including synapse development and calcium channel diversity. Alternative splicing is regulated by the expression...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Dunn et al. 22 (5): 908.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: