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  1. ARTICLE: AAA+: A Class of Chaperone-Like ATPases Associated with the Assembly, Operation, and Disassembly of Protein Complexes
    • Andrew F. Neuwald,
    • L. Aravind,
    • John L. Spouge,
    • and Eugene V. Koonin
    Genome Res. January 1, 1999 9: 27-43; doi:10.1101/gr.9.1.27
    ...X ( Levchenko et al. 1997 ) is not inconsistent with our analysis. Within these families, AAA+ modules occur either singly or as repeats. Notably, the huge dynein heavy chain subunit contains six modules (Fig. 1 ), although two of these are hard to detect because they are poorly conserved and their P...
  2. LETTER: Genome Analysis of F. nucleatum sub spp vincentii and Its Comparison With the Genome of F. nucleatum ATCC 25586
    • Vinayak Kapatral,
    • Natalia Ivanova,
    • Iain Anderson,
    • Gary Reznik,
    • Anamitra Bhattacharyya,
    • Warren L. Gardner,
    • Natalia Mikhailova,
    • Alla Lapidus,
    • Niels Larsen,
    • Mark D'Souza,
    • Theresa Walunas,
    • Robert Haselkorn,
    • Ross Overbeek,
    • and Nikos Kyrpides
    Genome Res. June 2003 13: 1180-1189; doi:10.1101/gr.566003
    ..., they can survive under microaerophilic conditions because of the presence of NADH oxidase (EC 1.6.99.3). The anaerobic respiration system in Fusobacteria is complex. Several major routes for electrons that enter into the respiratory chain have been identified, including Na+ translocating NADH...
  3. Research: Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression
    • Suhaida A. Selamat,
    • Brian S. Chung,
    • Luc Girard,
    • Wei Zhang,
    • Ying Zhang,
    • Mihaela Campan,
    • Kimberly D. Siegmund,
    • Michael N. Koss,
    • Jeffrey A. Hagen,
    • Wan L. Lam,
    • Stephen Lam,
    • Adi F. Gazdar,
    • and Ite A. Laird-Offringa
    Genome Res. July 2012 22: 1197-1211; Published in Advance May 21, 2012, doi:10.1101/gr.132662.111
    ...Keratin 8: Cellular structure; signal transduction Sartor et al. 2011 LAMB3 Laminin, beta 3: Interaction with ECM, cell migration, attachment Sathyanarayana et al. 2003 MX2 Myxovirus (influenza virus) resistance 2: GTPase Kobayashi et al. 2004 PROM2 Prominin 2: Organization of plasma membrane Rohan et al...
  4. RESEARCH: Comparative Genomics of the Archaea (Euryarchaeota): Evolution of Conserved Protein Families, the Stable Core, and the Variable Shell
    • Kira S. Makarova,
    • L. Aravind,
    • Michael Y. Galperin,
    • Nick V. Grishin,
    • Roman L. Tatusov,
    • Yuri I. Wolf,
    • and Eugene V. Koonin
    Genome Res. July 1, 1999 9: 608-628; doi:10.1101/gr.9.7.608
    ...refractory to the detection of bacterial homologs despite extensive searches [e.g., several families of ribosomal proteins, translation initiation factor eIF-1β, three subunits (K, L, and N) of DNA-dependent RNA polymerase, and two DNA primase subunits]. Synapomorphies (shared-derived characters) Among...
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