Searching journal content for articles similar to Di Rienzi et al. 22 (10): 1940.

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  1. Research: The genomic basis of evolutionary differentiation among honey bees
    • Bertrand Fouks,
    • Philipp Brand,
    • Hung N. Nguyen,
    • Jacob Herman,
    • Francisco Camara,
    • Daniel Ence,
    • Darren E. Hagen,
    • Katharina J. Hoff,
    • Stefanie Nachweide,
    • Lars Romoth,
    • Kimberly K.O. Walden,
    • Roderic Guigo,
    • Mario Stanke,
    • Giuseppe Narzisi,
    • Mark Yandell,
    • Hugh M. Robertson,
    • Nikolaus Koeniger,
    • Panuwan Chantawannakul,
    • Michael C. Schatz,
    • Kim C. Worley,
    • Gene E. Robinson,
    • Christine G. Elsik,
    • and Olav Rueppell
    Genome Res. July 2021 31: 1203-1215; Published in Advance May 4, 2021, doi:10.1101/gr.272310.120
    ...al. 2013; Terrapon et al. 2014; Kapheim et al. 2015; Harpur et al. 2017; Harrison et al. 2018). In contrast to the major focus on studying the genomic bases of the origin of sociality and associated traits, the maintenance and diversification of social traits has received limited attention (Simola et...
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  2. Research: Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
    • Xin Li,
    • San-Gang He,
    • Wen-Rong Li,
    • Ling-Yun Luo,
    • Ze Yan,
    • Dong-Xin Mo,
    • Xing Wan,
    • Feng-Hua Lv,
    • Ji Yang,
    • Ya-Xi Xu,
    • Juan Deng,
    • Qiang-Hui Zhu,
    • Xing-Long Xie,
    • Song-Song Xu,
    • Chen-Xi Liu,
    • Xin-Rong Peng,
    • Bin Han,
    • Zhong-Hui Li,
    • Lei Chen,
    • Jian-Lin Han,
    • Xue-Zhi Ding,
    • Renqing Dingkao,
    • Yue-Feng Chu,
    • Jin-Yan Wu,
    • Li-Min Wang,
    • Ping Zhou,
    • Ming-Jun Liu,
    • and Meng-Hua Li
    Genome Res. September 2022 32: 1669-1684; Published in Advance August 10, 2022, doi:10.1101/gr.276769.122
    ...of the interspecific hybrids, intercross population, and native sheep breeds. We show a case for creating new traits in domestic animals on a short timescale by combining the desirable attributes of wild relatives. Genomic recombination may help to maintain a repository of epigenes or epialleles generated...
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  3. Research: The asymmetric distribution of RNA polymerase II and nucleosomes on replicated daughter genomes is caused by differences in replication timing between the lagging and the leading strand
    • Rahima Ziane,
    • Alain Camasses,
    • and Marta Radman-Livaja
    Genome Res. February 2022 32: 337-356; Published in Advance January 18, 2022, doi:10.1101/gr.275387.121
    ...they are instructive of the underlying gene expression state are, however, still open questions.The cell is faced with two problems after every replication event: (1) It has to either restore its chromatin configuration to its prereplication state on both daughter s in order to maintain the same transcription program...
  4. Research: Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches
    • Fan Han,
    • Sangeet Lamichhaney,
    • B. Rosemary Grant,
    • Peter R. Grant,
    • Leif Andersson,
    • and Matthew T. Webster
    Genome Res. June 2017 27: 1004-1015; Published in Advance April 25, 2017, doi:10.1101/gr.212522.116
    ...in such regions, as depicted in Supplemental Figure S1A. An example of such genomic islands with elevated dXY is seen in comparisons of cichlid ecomorphs, which interbreed but maintain their distinct morphologies (Malinsky et al. 2015;McGee et al. 2016). A similar genomic pattern also could be formed without...
  5. Resource: Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum
    • Alistair Miles,
    • Zamin Iqbal,
    • Paul Vauterin,
    • Richard Pearson,
    • Susana Campino,
    • Michel Theron,
    • Kelda Gould,
    • Daniel Mead,
    • Eleanor Drury,
    • John O'Brien,
    • Valentin Ruano Rubio,
    • Bronwyn MacInnis,
    • Jonathan Mwangi,
    • Upeka Samarakoon,
    • Lisa Ranford-Cartwright,
    • Michael Ferdig,
    • Karen Hayton,
    • Xin-zhuan Su,
    • Thomas Wellems,
    • Julian Rayner,
    • Gil McVean,
    • and Dominic Kwiatkowski
    Genome Res. September 2016 26: 1288-1299; Published in Advance August 16, 2016, doi:10.1101/gr.203711.115
    ...Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum Alistair Miles 1 , 2 , Zamin Iqbal 3 , Paul Vauterin 1 , Richard Pearson 1 , 2 , Susana Campino 2 , Michel Theron 2 , Kelda...
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  6. Research: Tissue-specific disallowance of housekeeping genes: The other face of cell differentiation
    • Lieven Thorrez,
    • Ilaria Laudadio,
    • Katrijn Van Deun,
    • Roel Quintens,
    • Nico Hendrickx,
    • Mikaela Granvik,
    • Katleen Lemaire,
    • Anica Schraenen,
    • Leentje Van Lommel,
    • Stefan Lehnert,
    • Cristina Aguayo-Mazzucato,
    • Rui Cheng-Xue,
    • Patrick Gilon,
    • Iven Van Mechelen,
    • Susan Bonner-Weir,
    • Frédéric Lemaigre,
    • and Frans Schuit
    Genome Res. January 2011 21: 95-105; Published in Advance November 18, 2010, doi:10.1101/gr.109173.110
    ...Bonner-Weir, Susan Lehnert, S Susan, Bonner-Weir Mechelen Lieven Aguayo-Mazzucato, C Cheng-Xue, R Schuit Lemaire 10.1101/gr.109173.110 1088-9051 genome;gr.109173.110 Tissue-specific disallowance of housekeeping genes: The other face of cell differentiation Research Tissue-specific disallowance...
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  7. Research: OPA1 links human mitochondrial genome maintenance to mtDNA replication and distribution
    • Ghizlane Elachouri,
    • Sara Vidoni,
    • Claudia Zanna,
    • Alexandre Pattyn,
    • Hassan Boukhaddaoui,
    • Karen Gaget,
    • Patrick Yu-Wai-Man,
    • Giuseppe Gasparre,
    • Emmanuelle Sarzi,
    • Cécile Delettre,
    • Aurélien Olichon,
    • Dominique Loiseau,
    • Pascal Reynier,
    • Patrick F. Chinnery,
    • Agnès Rotig,
    • Valerio Carelli,
    • Christian P. Hamel,
    • Michela Rugolo,
    • and Guy Lenaers
    Genome Res. January 2011 21: 12-20; Published in Advance October 25, 2010, doi:10.1101/gr.108696.110
    ...OPA1 links human mitochondrial genome maintenance to mtDNA replication and distribution Ghizlane Elachouri 1 , 10 , Sara Vidoni 1 , 2 , 10 , Claudia Zanna 2 , Alexandre Pattyn 1 , Hassan Boukhaddaoui 1 , Karen Gaget 1...
  8. Research: Genomic insights into the fate of colistin resistance and Acinetobacter baumannii during patient treatment
    • Evan S. Snitkin,
    • Adrian M. Zelazny,
    • Jyoti Gupta,
    • NISC Comparative Sequencing Program,
    • Tara N. Palmore,
    • Patrick R. Murray,
    • and Julia A. Segre
    Genome Res. July 2013 23: 1155-1162; Published in Advance April 5, 2013, doi:10.1101/gr.154328.112
    ...of reacquiring colistin resistance when subsequently challenged in vitro. On face value, these results supported an in vivo fitness cost preventing the evolution of stable colistin resistance. However, more careful analysis of WGS data identified genomic evidence for stable colistin resistance undetected...
  9. Method: Mapping genomic hotspots of DNA damage by a single-strand-DNA-compatible and strand-specific ChIP-seq method
    • Zhi-Xiong Zhou,
    • Mei-Jun Zhang,
    • Xu Peng,
    • Yuko Takayama,
    • Xing-Ya Xu,
    • Ling-Zhi Huang,
    • and Li-Lin Du
    Genome Res. April 2013 23: 705-715; Published in Advance December 17, 2012, doi:10.1101/gr.146357.112
    ...K56 Figure 2. Rad52 enrichment patterns in pfh1-R20. Rad52 SPI-seq read distribution along chromosome 1 in pfh1-R20 at 20°C. The units on the y-axes are reads per 10 million. The positions and naming of replication origins are as described by Hayashi et al. (2007). Zhou et al. 708 Genome Research...
  10. LETTER: How reliable are empirical genomic scans for selective sweeps?
    • Kosuke M. Teshima,
    • Graham Coop,
    • and Molly Przeworski
    Genome Res. June 2006 16: 702-712; Published in Advance May 10, 2006, doi:10.1101/gr.5105206
    ...bottleneck rather than maintained a constant size. One implication of these results is that, insofar as attributes of the beneficial mutation (e.g., the dominance coefficient) affect the power to detect targets of selection, genomic scans will yield an unrepresentative subset of loci that contribute...
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