Searching journal content for articles similar to Delimata-Raczek et al..

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  1. Method: Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data
    • Wanqing Shao and
    • Ting Wang
    Genome Res. January 2021 31: 88-100; Published in Advance December 21, 2020, doi:10.1101/gr.265173.120
    ...expression at the transcript level effectively reduces noise. As proof of principle, we applied this strategy to mouse embryonic stem cells and successfully captured the expression profile of endogenous retroviruses in single cells. We further expanded our analysis to scRNA-seq data from early stages...
  2. Research: Vertebrates show coordinated elevated expression of mitochondrial and nuclear genes after birth
    • Hadar Medini and
    • Dan Mishmar
    Genome Res. March 2025 35: 459-474; Published in Advance March 4, 2025, doi:10.1101/gr.279700.124
    ...DNA gene expression is generally elevated across evolutionTo assess the dynamics of mitochondrial transcript regulation during metazoan development, we have analyzed publicly available bulk RNA-seq data from six mammals—Homo sapiens, human; Macaca mulatta, rhesus monkey; Mus musculus, mouse; Rattus...
  3. Research: Genome-wide transcript and protein analysis highlights the role of protein homeostasis in the aging mouse heart
    • Isabela Gerdes Gyuricza,
    • Joel M. Chick,
    • Gregory R. Keele,
    • Andrew G. Deighan,
    • Steven C. Munger,
    • Ron Korstanje,
    • Steven P. Gygi,
    • and Gary A. Churchill
    Genome Res. May 2022 32: 838-852; Published in Advance March 11, 2022, doi:10.1101/gr.275672.121
    ...-related change that occur across different genetic backgrounds and can associate heterogeneity in aging traits to genetic loci. We analyze transcriptome data from RNA sequencing (RNA-seq) and proteome data from mass spectrometry of heart tissues collected from healthy DO mice at ages 6, 12, and 18 mo. At 6 mo...
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