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Research: Inference of selective forces on house mouse genomes during secondary contact in East Asia
- Kazumichi Fujiwara,
- Shunpei Kubo,
- Toshinori Endo,
- Toyoyuki Takada,
- Toshihiko Shiroishi,
- Hitoshi Suzuki,
- and Naoki Osada
Genome Res. March 2024 34: 366-375; Published in Advance March 20, 2024, doi:10.1101/gr.278828.123
...of chemical stimulus involved in sensory perception (GO0050907), showed the strongest bias (Supplemental Fig. S12). These castaneus-enriched vomeronasal receptor genes were scattered across different olfactory/vomeronasal genomic clusters on the mouse , with most genes located in a large cluster on Chromosome...
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LETTER: Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land
- Peng Shi and
- Jianzhi Zhang
Genome Res. February 2007 17: 166-174; Published in Advance January 8, 2007, doi:10.1101/gr.6040007
...receptor repertoires . Genome Res. 14 : 603 – 608 . ↵ Leinders-Zufall, T. , Brennan, P. , Widmayer, P. , S, P.C. , Maul-Pavicic, A. , Jager, M. , Li, X.H. , Breer, H. , Zufall, F. , Boehm, T. ( 2004 ) MHC class I peptides as chemosensory signals in the vomeronasal organ . Science 306 : 1033 – 1037...
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Research: High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation
- E. Josephine Clowney,
- Angeliki Magklara,
- Bradley M. Colquitt,
- Nidhi Pathak,
- Robert P. Lane,
- and Stavros Lomvardas
Genome Res. August 2011 21: 1249-1259; Published in Advance June 24, 2011, doi:10.1101/gr.120162.110
...biological functions and do not share recent common ancestry. Even when Olfactory Receptor genes are excluded from this list, the majority of these genes are organized in genomic clusters characterized by significant copy number variation and polymorphism (Supplemental Table S2; Wong et al. 2007; Liu et al...
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LETTER: A novel olfactory receptor gene family in teleost fish
- Luis R. Saraiva and
- Sigrun I. Korsching
Genome Res. October 2007 17: 1448-1457; Published in Advance August 23, 2007, doi:10.1101/gr.6553207
...accumulate introns . Genome Res. 17 : 1045 – 1050 . ↵ Del Punta, K. , Rothman, A. , Rodriguez, I. , Mombaerts, P. ( 2000 ) Sequence diversity and genomic organization of vomeronasal receptor genes in the mouse . Genome Res. 10 : 1958 – 1967 . ↵ Dulac, C. , Axel, R. ( 1995 ) A novel family of genes encoding...
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LETTER: Species Specificity in Rodent Pheromone Receptor Repertoires
- Robert P. Lane,
- Janet Young,
- Tera Newman,
- and Barbara J. Trask
Genome Res. April 2004 14: 603-608; doi:10.1101/gr.2117004
.... Genomic deletions created upon LINE-1 retrotransposition. Cell 110 : 315 -325. ↵ Herrada, G. and Dulac, C. 1997 . A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution. Cell 90 : 763 -773. ↵ Hughes, J.F. and Coffin, J.M. 2001...
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LETTER: Genomic islands of differentiation between house mouse subspecies
- Bettina Harr
Genome Res. June 2006 16: 730-737; Published in Advance May 10, 2006, doi:10.1101/gr.5045006
...and vomeronasal receptor genes in two mouse assemblies. Genomics 83 : 802 – 811 . Genomic islands of differentiation between house mouse subspecies Bettina Harr Institute for Genetics, Department of Evolutionary Genetics, 50674 Köln, Germany View larger version: In this window In a new window Figure 1. Maximum...
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LETTER: Organization and Evolution of a Gene-Rich Region of the Mouse Genome: A 12.7-Mb Region Deleted in the Del(13)Svea36H Mouse
- Ann-Marie Mallon,
- Laurens Wilming,
- Joseph Weekes,
- James G.R. Gilbert,
- Jennifer Ashurst,
- Sandrine Peyrefitte,
- Lucy Matthews,
- Matthew Cadman,
- Richard McKeone,
- Chris A. Sellick,
- Ruth Arkell,
- Marc R.M. Botcherby,
- Mark A. Strivens,
- R. Duncan Campbell,
- Simon Gregory,
- Paul Denny,
- John M. Hancock,
- Jane Rogers,
- and Steve D.M. Brown
Genome Res. October 2004 14: 1888-1901; Published in Advance September 13, 2004, doi:10.1101/gr.2478604
...genome, reflecting high local densities of three gene families (vomeronasal receptors, serpins, and prolactins) which are greatly expanded relative to human. Transposable elements are concentrated near these gene families. We therefore suggest that their neighborhoods are gene factories, regions...
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LETTER: G Protein-Coupled Receptor Genes in the FANTOM2 Database
- Yuka Kawasawa,
- Louise M. McKenzie,
- David P. Hill,
- Hidemasa Bono,
- RIKEN GER Group,
- GSL Members,
- and Masashi Yanagisawa
Genome Res. June 2003 13: 1466-1477; doi:10.1101/gr.1087603
...of them were cloned from testis, and some of them were from neonate cerebellum, eyeball, or skin. Although the FANTOM2 project rigorously collected cDNA libraries from various mouse tissues, neither vomeronasal organ nor olfactory epithelium, in which the pheromone or the odorant receptors are thought...
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LETTER: Characterization of Nonfunctional V1R-like Pheromone Receptor Sequences in Human
- Dominique Giorgi,
- Cynthia Friedman,
- Barbara J. Trask,
- and Sylvie Rouquier
Genome Res. December 1, 2000 10: 1979-1985; doi:10.1101/gr.146700
...of the multisequence family chAB4 located on various nonhomologous chromosomes. Mamm. Genome 9 : 58 – 63 . ↵ Bargmann C. ( 1997 ) Olfactory receptors, vomeronasal receptors, and the organization of olfactory information. Cell 90 : 585 – 587 . ↵ Ben-Arie N. , Lancet D. , Taylor C. , Khen M. , Walker N. , Ledbetter D...
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Research: Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X
- Di Kim Nguyen,
- Fan Yang,
- Rajinder Kaul,
- Can Alkan,
- Anthony Antonellis,
- Karen F. Friery,
- Baoli Zhu,
- Pieter J. de Jong,
- and Christine M. Disteche
Genome Res. March 2011 21: 402-409; Published in Advance January 31, 2011, doi:10.1101/gr.108563.110
...genes consisting of vomeronasal, olfactory receptor, and zinc-finger genes (Rhead et al. 2010). Hence, chromosome 7 sequences could not reliably be obtained from M. spretus. Nonetheless, based on sequence alignments, the 39end breakpoints of the translocation were clearly identified as the nucleotide...

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