Searching journal content for articles similar to Decottignies et al. 13 (3): 399.

Displaying results 1-10 of 14

For checked items

view abstracts
download to citation manager

Select this article
Research: Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages
- Tracy Jiaye Lee,
- Yu-Ching Liu,
- Wei-An Liu,
- Yu-Fei Lin,
- Hsin-Han Lee,
- Huei-Mien Ke,
- Jen-Pan Huang,
- Mei-Yeh Jade Lu,
- Chia-Lun Hsieh,
- Kuo-Fang Chung,
- Gianni Liti,
- and Isheng Jason Tsai
Genome Res. May 2022 32: 864-877; Published in Advance March 31, 2022, doi:10.1101/gr.276286.121
...,000 generations in the fission yeast Schizosaccharomyces pombe (Farlow et al. 2015).We calculated the mean neutrality index (NI) NITG (Stoletzki and Eyre-Walker 2011) for each lineage using polymorphism data from each lineage and S. paradoxus as an outgroup (Fig. 5A). NITG was higher in the domesticated lineages...
OPEN ACCESS ARTICLE
Select this article
LETTER: Correlations Between Gene Expression and Gene Conservation in Fission Yeast
- Juan Mata and
- Jürg Bähler
Genome Res. December 2003 13: 2686-2690; Published in Advance January 1, 2003, doi:10.1101/gr.1420903
...-Perez, I., and Nurse, P. 2003 . Schizosaccharomyces pombe essential genes: A pilot study. Genome Res. 13 : 399 -406. ↵ Fraser, A.G., Kamath, R.S., Zipperlen, P., Martinez-Campos, M., Sohrmann, M., and Ahringer, J. 2000 . Functional genomic analysis of C. elegans chromosome I by systematic RNA interference...
Select this article
Research: The spatial and temporal organization of origin firing during the S-phase of fission yeast
- Atanas Kaykov and
- Paul Nurse
Genome Res. March 2015 25: 391-401; Published in Advance February 3, 2015, doi:10.1101/gr.180372.114
...contributes to the completion of DNA replication; and the relationship of origins with nuclear replication foci is unclear. Here we address these questions in the fission yeast Schizosaccharomyces pombe by analyzing long single DNA molecules that can approach the full length of chromosomes. The fission yeast...
OPEN ACCESS ARTICLE
Select this article
Resource: Pervasive and dynamic transcription initiation in Saccharomyces cerevisiae
- Zhaolian Lu and
- Zhenguo Lin
Genome Res. July 2019 29: 1198-1210; Published in Advance May 10, 2019, doi:10.1101/gr.245456.118
...), the numbers of TSS supported by at least two tags are 227,021 and 204,197, respectively (Supplemental Fig. S2). TSS-seq data mapped 225,563 TSSs supported by TPM ≥ 0.1 (Malabat et al. 2015). In the fission yeast Schizosaccharomyces pombe, which has a similar size (12.61 Mb) as S. cerevisiae, only 93,736 CTSSs...
Select this article
Method: Paired-end sequencing of Fosmid libraries by Illumina
- Louise J.S. Williams,
- Diana G. Tabbaa,
- Na Li,
- Aaron M. Berlin,
- Terrance P. Shea,
- Iain MacCallum,
- Michael S. Lawrence,
- Yotam Drier,
- Gad Getz,
- Sarah K. Young,
- David B. Jaffe,
- Chad Nusbaum,
- and Andreas Gnirke
Genome Res. November 2012 22: 2241-2249; Published in Advance July 16, 2012, doi:10.1101/gr.138925.112
...the Fosill strategy, we constructed a Fosmid library from 30 mg Schizosaccharomyces pombe genomic DNA. The library size, as estimated by plating smallscale test transductions on chloramphenicol plates, was 1.4million colony-forming units (cfu). We performed a large-scale transduction with the remainder...
Select this article
Methods: Predicting essential genes in fungal genomes
- Michael Seringhaus,
- Alberto Paccanaro,
- Anthony Borneman,
- Michael Snyder,
- and Mark Gerstein
Genome Res. September 2006 16: 1126-1135; Published in Advance August 9, 2006, doi:10.1101/gr.5144106
...2000 ). In fungal species they account for roughly one fifth of the total genes: 17.8% in Saccharomyces cerevisiae ( Winzeler et al. 1999 ; Giaever et al. 2002 ), and 17.5% of the small subset in Schizosaccharomyces pombe studied to date ( Decottignies et al. 2003 ). Because phenotype is a product...
OPEN ACCESS ARTICLE
Select this article
Research: Genome-wide depletion of replication initiation events in highly transcribed regions
- Melvenia M. Martin,
- Michael Ryan,
- RyangGuk Kim,
- Anna L. Zakas,
- Haiqing Fu,
- Chii Mei Lin,
- William C. Reinhold,
- Sean R. Davis,
- Sven Bilke,
- Hongfang Liu,
- James H. Doroshow,
- Mark A. Reimers,
- Manuel S. Valenzuela,
- Yves Pommier,
- Paul S. Meltzer,
- and Mirit I. Aladjem
Genome Res. November 2011 21: 1822-1832; Published in Advance August 3, 2011, doi:10.1101/gr.124644.111
...–484. Dai J, Chuang RY, Kelly TJ. 2005. DNA replication origins in the Schizosaccharomyces pombe . Proc Natl Acad Sci 102: 337–342. Delgado S, Go´mez M, Bird A, Antequera F. 1998. Initiation of DNA replication at CpG islands in mammalian chromosomes. EMBO J 17: 2426–2435. Desprat R, Thierry-Mieg D, Lailler...
Select this article
Resource: ProPhylER: A curated online resource for protein function and structure based on evolutionary constraint analyses
- Jonathan Binkley,
- Kalpana Karra,
- Andrew Kirby,
- Midori Hosobuchi,
- Eric A. Stone,
- and Arend Sidow
Genome Res. January 2010 20: 142-154; Published in Advance October 21, 2009, doi:10.1101/gr.097121.109
Select this article
LETTER: Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae
- James P. Kastenmayer,
- Li Ni,
- Angela Chu,
- Lauren E. Kitchen,
- Wei-Chun Au,
- Hui Yang,
- Carole D. Carter,
- David Wheeler,
- Ronald W. Davis,
- Jef D. Boeke,
- Michael A. Snyder,
- and Munira A. Basrai
Genome Res. March 2006 16: 365-373; doi:10.1101/gr.4355406
...; Pruitt et al. 2005 ). We determined the percentage of annotated small proteins from additional eukaryotes in the NCBI RefSeq database (see Methods). We selected representative eukaryotes including another fungus ( Schizosaccharomyces pombe ), worms ( Caenorhabditis elegans ), plants ( Arabidopsis...
Select this article
PERSPECTIVE: Origin of phenotypes: Genes and transcripts
- Thomas R. Gingeras
Genome Res. June 2007 17: 682-690; doi:10.1101/gr.6525007
...elements in 1% of the human by the ENCODE pilot project . Nature , (in press) . ↵ Euskirchen, G. , Royce, T.E. , Bertone, P. , Martone, R. , Rinn, J.L. , Nelson, F.K. , Sayward, F. , Luscombe, N.M. , Miller, P. , Gerstein, M. , et al. ( 2004 ) CREB binds to multiple loci on human chromosome 22. Mol. Cell...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Decottignies et al. 13 (3): 399.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: