Searching journal content for articles similar to De Coster et al. 34 (11): 2074.

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  1. Method: Read-level genotyping of short tandem repeats using long reads and single-nucleotide variation with STRkit
    • David R. Lougheed,
    • Tomi Pastinen,
    • and Guillaume Bourque
    Genome Res. March 2026 36: 578-588; Published in Advance January 15, 2026, doi:10.1101/gr.280766.125
    ..., Melin M, Ameur A, Rademakers R. 2024. Visualization and analysis of medically relevant tandem repeats in nanopore sequencing of control cohorts with pathSTR. Genome Res 34: 2074–2080. doi:10.1101/gr.279265.124 ↵De Luca A, Morella A, Consoli F, Fanelli S, Thibert JR, Statt S, Latham GJ, Squitieri...
  2. Research: A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities
    • Jesper Eisfeldt,
    • Adam Ameur,
    • Felix Lenner,
    • Esmee Ten Berk de Boer,
    • Marlene Ek,
    • Josephine Wincent,
    • Raquel Vaz,
    • Jesper Ottosson,
    • Tord Jonson,
    • Sofie Ivarsson,
    • Sofia Thunström,
    • Alexandra Topa,
    • Simon Stenberg,
    • Anna Rohlin,
    • Anna Sandestig,
    • Margareta Nordling,
    • Pia Palmebäck,
    • Magnus Burstedt,
    • Frida Nordin,
    • Eva-Lena Stattin,
    • Maria Sobol,
    • Panagiotis Baliakas,
    • Marie-Louise Bondeson,
    • Ida Höijer,
    • Kristine Bilgrav Saether,
    • Lovisa Lovmar,
    • Hans Ehrencrona,
    • Malin Melin,
    • Lars Feuk,
    • and Anna Lindstrand
    Genome Res. November 2024 34: 1774-1784; Published in Advance October 29, 2024, doi:10.1101/gr.279510.124
    ...relevant tandem repeats in nanopore sequencing of control cohorts with pathSTR. Genome Res (this issue) 34: 2074–2080. doi:10.1101/gr.279265.124 ↵Dolzhenko E, English A, Dashnow H, De Sena Brandine G, Mokveld T, Rowell WJ, Karniski C, Kronenberg Z, Danzi MC, Cheung WA, et al. 2024. Characterization...
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  3. Mini-Review: A Hitchhiker's Guide to long-read genomic analysis
    • Medhat Mahmoud,
    • Daniel P. Agustinho,
    • and Fritz J. Sedlazeck
    Genome Res. April 2025 35: 545-558; doi:10.1101/gr.279975.124
    ...different tools. While some methods focus on shorter repeats, others target longer, more complex structures, hindering direct comparisons and meta-analyses. Recent tools from PacBio (TRGT [Dolzhenko et al. 2024]) and ONT (Medaka and pathSTR [De Coster et al. 2024]) have been improved and have shown great...
  4. Editorial: Revolutionizing genomics and medicine—one long molecule at a time
    • Ana Conesa,
    • Alexander Hoischen,
    • and Fritz J. Sedlazeck
    Genome Res. November 2024 34: ix-xi; doi:10.1101/gr.280179.124
    ..., Ameur A, Rademakers R. 2024. Visualization and analysis of medically relevant tandem repeats in nanopore sequencing of control cohorts with pathSTR. Genome Res (this issue) 34: 2074–2080. doi:10.1101/gr.279265.124 ↵de Groot N, van der Wiel M, Le NG, de Groot NG, Bruijnesteijn J, Bontrop RE. 2024...
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