Searching journal content for articles similar to Daza-Vamenta et al. 14 (8): 1501.

Displaying results 1-10 of 12

For checked items

view abstracts
download to citation manager

Select this article
Research: Unraveling the architecture of major histocompatibility complex class II haplotypes in rhesus macaques
- Nanine de Groot,
- Marit van der Wiel,
- Ngoc Giang Le,
- Natasja G. de Groot,
- Jesse Bruijnesteijn,
- and Ronald E. Bontrop
Genome Res. November 2024 34: 1811-1824; Published in Advance October 23, 2024, doi:10.1101/gr.278968.124
...characterize these complex regions to gain insight into the impact of genomic diversity on health and disease. Here we resolve the organization of complete major histocompatibility complex (MHC) class II regions in rhesus macaques by using a long-read sequencing strategy (Oxford Nanopore Technologies...
OPEN ACCESS ARTICLE
Select this article
Resource: Complete sequencing of a cynomolgus macaque major histocompatibility complex haplotype
- Julie A. Karl,
- Trent M. Prall,
- Hailey E. Bussan,
- Joshua M. Varghese,
- Aparna Pal,
- Roger W. Wiseman,
- and David H. O'Connor
Genome Res. March 2023 33: 448-462; Published in Advance February 28, 2023, doi:10.1101/gr.277429.122
...of human diseases. Although the macaque major histocompatibility complex (MHC) region shares most features with the human leukocyte antigen (HLA) region, macaques have an expanded repertoire of MHC class I genes. Although a chimera of two rhesus macaque MHC haplotypes was first published in 2004...
Select this article
Editorial: Revolutionizing genomics and medicine—one long molecule at a time
- Ana Conesa,
- Alexander Hoischen,
- and Fritz J. Sedlazeck
Genome Res. November 2024 34: ix-xi; doi:10.1101/gr.280179.124
.... Unraveling the architecture of major histocompatibility complex class II haplotypes in rhesus macaques. Genome Res (this issue) 34: 1811–1824. doi:10.1101/gr.278968.124 ↵Diensthuber G, Pryszcz LP, Llovera L, Lucas MC, Delgado-Tejedor A, Cruciani S, Roignant J-Y, Begik O, Novoa EM. 2024. Enhanced detection...
Select this article
Method: Full-resolution HLA and KIR gene annotations for human genome assemblies
- Ying Zhou,
- Li Song,
- and Heng Li
Genome Res. November 2024 34: 1931-1941; Published in Advance June 5, 2024, doi:10.1101/gr.278985.124
...14, CN-T2T, IPD-IMGT/HLA, and IPD-IMGT/MHC, including 198 HLA-DRB1, seven HLA-DRB3, four HLA-DRB4, and six HLA-DRB5 unique CDSs in total. DRB CDSs from non-human primate species, chimpanzee (patr), crab-eating macaque (mafa), and rhesus monkey (mamu), are used as the outgroup for tree construction...
Select this article
Resource: The genome of the vervet (Chlorocebus aethiops sabaeus)
- Wesley C. Warren,
- Anna J. Jasinska,
- Raquel García-Pérez,
- Hannes Svardal,
- Chad Tomlinson,
- Mariano Rocchi,
- Nicoletta Archidiacono,
- Oronzo Capozzi,
- Patrick Minx,
- Michael J. Montague,
- Kim Kyung,
- LaDeana W. Hillier,
- Milinn Kremitzki,
- Tina Graves,
- Colby Chiang,
- Jennifer Hughes,
- Nam Tran,
- Yu Huang,
- Vasily Ramensky,
- Oi-wa Choi,
- Yoon J. Jung,
- Christopher A. Schmitt,
- Nikoleta Juretic,
- Jessica Wasserscheid,
- Trudy R. Turner,
- Roger W. Wiseman,
- Jennifer J. Tuscher,
- Julie A. Karl,
- Jörn E. Schmitz,
- Roland Zahn,
- David H. O'Connor,
- Eugene Redmond,
- Alex Nisbett,
- Béatrice Jacquelin,
- Michaela C. Müller-Trutwin,
- Jason M. Brenchley,
- Michel Dione,
- Martin Antonio,
- Gary P. Schroth,
- Jay R. Kaplan,
- Matthew J. Jorgensen,
- Gregg W.C. Thomas,
- Matthew W. Hahn,
- Brian J. Raney,
- Bronwen Aken,
- Rishi Nag,
- Juergen Schmitz,
- Gennady Churakov,
- Angela Noll,
- Roscoe Stanyon,
- David Webb,
- Francoise Thibaud-Nissen,
- Magnus Nordborg,
- Tomas Marques-Bonet,
- Ken Dewar,
- George M. Weinstock,
- Richard K. Wilson,
- and Nelson B. Freimer
Genome Res. December 2015 25: 1921-1933; Published in Advance September 16, 2015, doi:10.1101/gr.192922.115
...variations of a pedigreed C. a. sabaeus population. Through comparative analyses with human and rhesus macaque, we characterize at high resolution the unique chromosomal fission events that differentiate the vervets and their close relatives from most other catarrhine primates, in whom karyotype is highly...
Select this article
Method: Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data
- Li Song,
- Gali Bai,
- X. Shirley Liu,
- Bo Li,
- and Heng Li
Genome Res. May 11, 2023 gr.277585.122; Published in Advance May 11, 2023, doi:10.1101/gr.277585.122
...may open the opportunity for HLA and KIR genotyping across various sequencing applications. Introduction Polymorphisms in immune receptor genes diversify the immune response, which strengthens the resilience of a population to diseases. In particular, major histocompatibility complex (MHC) encoded...
ACCEPTED MANUSCRIPT
Select this article
Methods: The difficulty of avoiding false positives in genome scans for natural selection
- Swapan Mallick,
- Sante Gnerre,
- Paul Muller,
- and David Reich
Genome Res. May 2009 19: 922-933; doi:10.1101/gr.086512.108
...selected genes (PSGs) in which there is statistically significant evidence of an acceleration in the rate of amino acid changes on the human or chimpanzee lineages since the two species diverged (Bakewell et al. 2007; Rhesus Macaque Genome Sequencing and Analysis Consortium 2007). Intriguingly...
Select this article
LETTER: Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates
- Jennifer G. Sambrook,
- Arman Bashirova,
- Sophie Palmer,
- Sarah Sims,
- John Trowsdale,
- Laurent Abi-Rached,
- Peter Parham,
- Mary Carrington,
- and Stephan Beck
Genome Res. January 2005 15: 25-35; doi:10.1101/gr.2381205
...). These two species diverged from humans ∼5 and ∼30 Mya, respectively ( Horai 1995 ; Kumar and Hedges 1998 ). A family of KIR cDNA has been characterized in common chimpanzee ( Khakoo et al. 2000 ) and rhesus macaque ( Grendell et al. 2001 ; Hershberger et al. 2001 ) as well as bonobo ( Rajalingam et al. 2001...
Select this article
ARTICLE: Gene copy number variation spanning 60 million years of human and primate evolution
- Laura Dumas,
- Young H. Kim,
- Anis Karimpour-Fard,
- Michael Cox,
- Janet Hopkins,
- Jonathan R. Pollack,
- and James M. Sikela
Genome Res. September 2007 17: 1266-1277; Published in Advance July 31, 2007, doi:10.1101/gr.6557307
...is as follows: human 84/0, Pan lineage 75/4, gorilla 88/14, orangutan 107/10, gibbon 336/213, OWM (baboon and macaque combined) 211/158, marmoset 408/135, and lemur 1209/3530.The evolutionary age of each lineage in millions of years (depicted by the horizontal line) refers to the approximate divergence times...
Select this article
LETTER: Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
- Ines Hellmann,
- Yuan Mang,
- Zhiping Gu,
- Peter Li,
- Francisco M. de la Vega,
- Andrew G. Clark,
- and Rasmus Nielsen
Genome Res. July 2008 18: 1020-1029; Published in Advance April 14, 2008, doi:10.1101/gr.074187.107
...or more individuals and a relatively high error rate for individual reads. Applying this method to data from the Celera human sequencing and SNP discovery project, we obtain estimates of nucleotide diversity in windows spanning the human and show that the diversity to divergence ratio is reduced...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Daza-Vamenta et al. 14 (8): 1501.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: