Searching journal content for articles similar to Date and Stoeckert 16 (4): 542.

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  1. Method: Genome-scale identification of cellular pathways required for cell surface recognition
    • Sumana Sharma,
    • S. Josefin Bartholdson,
    • Amalie C.M. Couch,
    • Kosuke Yusa,
    • and Gavin J. Wright
    Genome Res. September 2018 28: 1372-1382; Published in Advance June 18, 2018, doi:10.1101/gr.231183.117
    ...to determine if this approach could be used to identify low-affinity receptors for cell signaling ligands. As a model system, we selected the interaction between Plasmodium falciparum RH5 and its host receptor basigin (BSG) because it is a low-affinity interaction (KD ∼ 1 µM), is biochemically and structurally...
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  2. Method: Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
    • Ferhat Ay,
    • Timothy L. Bailey,
    • and William Stafford Noble
    Genome Res. June 2014 24: 999-1011; Published in Advance February 5, 2014, doi:10.1101/gr.160374.113
    ...in the nucleus is most accurate at the fine scale of individual nucleosomes and at the large scale of chromosome territories. However, accurate modeling of DNA architecture at the intermediate scale of ∼50 kb–10 Mb is crucial for identifying functional interactions among regulatory elements and their target...
  3. LETTER: High-Throughput Generation of P. falciparum Functional Molecules by Recombinational Cloning
    • João Carlos Aguiar,
    • Joshua LaBaer,
    • Peter L. Blair,
    • Victoria Y. Shamailova,
    • Malvika Koundinya,
    • Joshua A. Russell,
    • Fengying Huang,
    • Wenhong Mar,
    • Robert M. Anthony,
    • Adam Witney,
    • Sonia R. Caruana,
    • Leonardo Brizuela,
    • John B. Sacci, Jr.,
    • Stephen L. Hoffman,
    • and Daniel J. Carucci
    Genome Res. October 15, 2004 14: 2076-2082; doi:10.1101/gr.2416604
    ....B., Chakrabarti, D., Martin, R.K., et al. 2001 . Co-ordinated programme of gene expression during asexual intraerythrocytic development of the human malaria parasite Plasmodium falciparum revealed by microarray analysis. Mol. Microbiol. 39 : 26 -36. ↵ Bowman, S., Lawson, D., Basham, D., Brown, D., Chillingworth...
  4. RECOMB Special/Review: Protein networks in disease
    • Trey Ideker and
    • Roded Sharan
    Genome Res. April 2008 18: 644-652; doi:10.1101/gr.071852.107
    ...of the malaria parasite Plasmodium falciparum . Nature 438 : 103 – 107 . ↵ Lage, K. , Karlberg, E.O. , Storling, Z.M. , Olason, P.I. , Pedersen, A.G. , Rigina, O. , Hinsby, A.M. , Tumer, Z. , Pociot, F. , Tommerup, N. , et al. ( 2007 ) A human phenome-interactome network of protein complexes implicated...
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