Searching journal content for articles similar to Damert et al. 19 (11): 1992.

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Letter: Exon-trapping mediated by the human retrotransposon SVA
- Dustin C. Hancks,
- Adam D. Ewing,
- Jesse E. Chen,
- Katsushi Tokunaga,
- and Haig H. Kazazian, Jr
Genome Res. November 2009 19: 1983-1991; Published in Advance July 27, 2009, doi:10.1101/gr.093153.109
..., both inactive and active retrotransposons drive genome evolution and may influence transcription through various mechanisms. In humans, three retrotransposon families are still active, but one of these, SVA, remains mysterious. Here we report the identification of a new subfamily of SVA, which...
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Research: Discovery of a new repeat family in the Callithrix jacchus genome
- Miriam K. Konkel,
- Brygg Ullmer,
- Erika L. Arceneaux,
- Sreeja Sanampudi,
- Sarah A. Brantley,
- Robert Hubley,
- Arian F.A. Smit,
- and Mark A. Batzer
Genome Res. May 2016 26: 649-659; Published in Advance February 25, 2016, doi:10.1101/gr.199075.115
...a much lower density and Chromosomes 18, 19, and 22 a higher density (Fig. 4). An uneven distribution of non-LTR retrotransposons across the chromosomes has been observed previously (e.g., SVA or Alu elements) (International Human Genome Sequencing Consortium 2001; Wang et al. 2005). Origin of the Platy...
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Research: Pedigree-based estimation of human mobile element retrotransposition rates
- Julie Feusier,
- W. Scott Watkins,
- Jainy Thomas,
- Andrew Farrell,
- David J. Witherspoon,
- Lisa Baird,
- Hongseok Ha,
- Jinchuan Xing,
- and Lynn B. Jorde
Genome Res. October 2019 29: 1567-1577; doi:10.1101/gr.247965.118
....01.019 ↵Damert A, Raiz J, Horn AV, Löwer J, Wang H, Xing J, Batzer MA, Löwer R, Schumann GG. 2009. 5′-Transducing SVA retrotransposon groups spread efficiently throughout the human . Genome Res 19: 1992–2008. doi:10.1101/gr.093435.109 ↵Dausset J, Cann H, Cohen D, Lathrop M, Lalouel JM, White R. 1990. Centre d...
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Research: The HUSH complex cooperates with TRIM28 to repress young retrotransposons and new genes
- Luisa Robbez-Masson,
- Christopher H.C. Tie,
- Lucia Conde,
- Hale Tunbak,
- Connor Husovsky,
- Iva A. Tchasovnikarova,
- Richard T. Timms,
- Javier Herrero,
- Paul J. Lehner,
- and Helen M. Rowe
Genome Res. May 4, 2018 ; Published in Advance May 4, 2018, doi:10.1101/gr.228171.117
...repression and DNA methylation of an SVA retrotransposon reporter. By using naıv̈e versus primed mouse pluripotent stem cells, we reveal a critical role for the HUSH complex in naıv̈e cells, implicating it in programming epigenetic marks in development. Although the HUSH component FAM208A binds to endogenous...
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Resource: Genetic features and genomic targets of human KRAB-zinc finger proteins
- Jonas de Tribolet-Hardy,
- Christian W. Thorball,
- Romain Forey,
- Evarist Planet,
- Julien Duc,
- Alexandre Coudray,
- Bara Khubieh,
- Sandra Offner,
- Cyril Pulver,
- Jacques Fellay,
- Michael Imbeault,
- Priscilla Turelli,
- and Didier Trono
Genome Res. August 2023 33: 1409-1423; Published in Advance September 20, 2023, doi:10.1101/gr.277722.123
...of tandem repeats (VNTR)-Alu (SVAs). ERVs and LINEs encode the reverse transcriptase and endonuclease activities necessary for their retrotransposition, whereas the nonautonomous SINE and SVA elements rely on LINE proteins for spreading. Due respectively to internal recombination and abortive...
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Research: Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements
- Priscilla Turelli,
- Nathaly Castro-Diaz,
- Flavia Marzetta,
- Adamandia Kapopoulou,
- Charlène Raclot,
- Julien Duc,
- Vannary Tieng,
- Simon Quenneville,
- and Didier Trono
Genome Res. August 2014 24: 1260-1270; Published in Advance May 30, 2014, doi:10.1101/gr.172833.114
...with older family members (types A–D) than with their younger, human-restricted counterparts (types E and F), despite equivalent mapping efficiency for members of the two subgroups. On average, about half of Class II HERVs, one-third of SVAs, and one-sixth of Class I HERVs marked by TRIM28 in ES cells still...
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Research: Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency
- Marc Friedli,
- Priscilla Turelli,
- Adamandia Kapopoulou,
- Benjamin Rauwel,
- Nathaly Castro-Díaz,
- Helen M. Rowe,
- Gabriela Ecco,
- Carmen Unzu,
- Evarist Planet,
- Angelo Lombardo,
- Bastien Mangeat,
- Barbara E. Wildhaber,
- Luigi Naldini,
- and Didier Trono
Genome Res. August 2014 24: 1251-1259; Published in Advance May 30, 2014, doi:10.1101/gr.172809.114
...; which in humans includeAlu repeats), or SVAs (SINE-VNTR-Alu, a hominoidspecific ERE family) (de Koning et al. 2011). These genetic invaders, which multiply by the copy-and-paste process that defines retrotransposons, are targeted during the first few days of embryogenesis by silencing mechanisms notably...
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Review: Origins, evolution, and phenotypic impact of new genes
- Henrik Kaessmann
Genome Res. October 2010 20: 1313-1326; Published in Advance July 22, 2010, doi:10.1101/gr.101386.109
...1 and SVA retrotransposon insertions (;10%) are associated with 39 transduction events, copying various genic elements into new genomic locations (Cordaux and Batzer 2009 and references therein). An interesting recent study provided initial evidence that 39 transduction may have led to the formation...

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