Searching journal content for articles similar to Corcoran et al. 26 (4): 486.

Displaying results 1-10 of 6090

For checked items

view abstracts
download to citation manager

Select this article
Review: Recent advances in methods to characterize archaic introgression in modern humans
- David Peede,
- Mayra M. Bañuelos,
- Jazeps Medina Tretmanis,
- Miriam Miyagi,
- and Emilia Huerta-Sánchez
Genome Res. February 2026 36: 239-256; Published in Advance January 16, 2026, doi:10.1101/gr.278993.124
..., or allele frequencies, to determine the likelihood of observing the derived allele.The most widely used site pattern-based method, Patterson’s D, detects introgression by comparing -wide counts of ABBA and BABA, which are expected to be equal in the absence of gene flow (Green et al. 2010; Durand et al...
OPEN ACCESS ARTICLE
Select this article
Research: Long-read genomics reveal extensive nuclear-specific evolution and allele-specific expression in a dikaryotic fungus
- Rita Tam,
- Mareike Möller,
- Runpeng Luo,
- Zhenyan Luo,
- Ashley Jones,
- Sambasivam Periyannan,
- John P. Rathjen,
- and Benjamin Schwessinger
Genome Res. June 2025 35: 1364-1376; Published in Advance April 11, 2025, doi:10.1101/gr.280359.124
...and transposable element (TE) density as peaks, and gene density as heatmaps within chromosome ideograms (10 kbp sliding windows). Locations of centromeres, telomeres, secretome genes, the ribosomal DNA (rDNA) array, and assembly gaps are annotated as per the legend. The mating type loci are labeled in black text...
OPEN ACCESS ARTICLE
Select this article
Research: Convergent recombination cessation between mating-type genes and centromeres in selfing anther-smut fungi
- Fantin Carpentier,
- Ricardo C. Rodríguez de la Vega,
- Sara Branco,
- Alodie Snirc,
- Marco A. Coelho,
- Michael E. Hood,
- and Tatiana Giraud
Genome Res. June 2019 29: 944-953; Published in Advance May 1, 2019, doi:10.1101/gr.242578.118
.... Gametophytic apomixis: elements and genetic regulation. Hereditas 93: 277–293. doi:10.1111/j.1601-5223.1980.tb01367.x ↵Badouin H, Hood ME, Gouzy J, Aguileta G, Siguenza S, Perlin MH, Cuomo CA, Fairhead C, Branca A, Giraud T. 2015. Chaos of rearrangements in the mating-type chromosomes of the anther-smut fungus...
Select this article
Research: Intergenic accumulation of RNA polymerase II maintains the potential for swift transcriptional restart upon release from quiescence
- Manuela Baquero Pérez,
- Gertjan Laenen,
- Isabelle Loïodice,
- Mickaël Garnier,
- Ugo Szachnowski,
- Antonin Morillon,
- Myriam Ruault,
- and Angela Taddei
Genome Res. October 2025 35: 2226-2239; Published in Advance August 12, 2025, doi:10.1101/gr.279874.124
...occur stochastically in the population, contributing to maintain a responsive quiescent chromatin, which can be mobilized differently to adapt to distinct environments.MethodsStrains and growth conditionsAll S. cerevisiae strains used in this study, haploid (mating type a) and isogenic to the W303...
Select this article
Method: Chromosome engineering to correct a complex rearrangement on Chromosome 8 reveals the effects of 8p syndrome on gene expression and neural differentiation
- Sophia N. Lee,
- Erin C. Banda,
- Lu Qiao,
- Sarah L. Thompson,
- Karan Singh,
- Ryan A. Hagenson,
- Teresa Davoli,
- Stefan F. Pinter,
- and Jason M. Sheltzer
Genome Res. March 2026 36: 547-560; Published in Advance January 12, 2026, doi:10.1101/gr.280425.125
...-pass whole- sequencing to determine the extent of the copy number alterations exhibited by the proband. The deletion spanned from the telomere of Chromosome 8p to position 7,247,573 (∼7.2 Mb) and encompassed 23 protein-coding genes, whereas the duplication spanned from position 11,828,865–40,361,770 (∼28...
Select this article
Research: Ancient dog introgression into the Iberian wolf genome may have facilitated adaptation to human-dominated landscapes
- Diana Lobo,
- Hernán E. Morales,
- Cock Van Oosterhout,
- José Vicente López-Bao,
- Pedro Silva,
- Luis Llaneza,
- Carolina Pacheco,
- Diana Castro,
- Germán Hernández-Alonso,
- George Pacheco,
- John Archer,
- M. Thomas P. Gilbert,
- Nuno Ferrand,
- and Raquel Godinho
Genome Res. March 2025 35: 432-445; Published in Advance February 14, 2025, doi:10.1101/gr.279093.124
...introgressed individuals, and qB is the mean -wide ancestry across all individuals. Therefore, positive Δancestry values indicate core hotspot regions for introgression from population B across the of all individuals. We computed Δancestry for all chromosomes using local dog ancestry estimates determined...
OPEN ACCESS ARTICLE
Select this article
Research: Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa
- Mariana Villalba de la Peña,
- Pauliina A.M. Summanen,
- Martta Liukkonen,
- and Ilkka Kronholm
Genome Res. April 2023 33: 599-611; Published in Advance March 15, 2023, doi:10.1101/gr.276992.122
...rates, we performed a mutation accumulation (MA) experiment in the filamentous fungus Neurospora crassa and sequenced the s of the 40 MA lines that had been propagated asexually for approximately 1015 mitoses. We detected 1322 mutations in total and observed that the mutation rate was higher in regions...
OPEN ACCESS ARTICLE
Select this article
Research: H3K27 and H3K9 methylation mask potential CTCF binding sites to maintain 3D genome integrity
- Kei Fukuda,
- Chikako Shimura,
- and Yoichi Shinkai
Genome Res. October 2025 35: 2199-2210; Published in Advance August 5, 2025, doi:10.1101/gr.280732.125
...H3K27 and H3K9 methylation mask potential CTCF binding sites to maintain 3D integrity Kei Fukuda1,2, Chikako Shimura1 and Yoichi Shinkai1 1Cellular Memory Laboratory, RIKEN Cluster for Pioneering Research, Wako 351-0198, Japan; 2Faculty of Life and Environmental Sciences, University of Yamanashi...
Select this article
Research: Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells
- Jennifer A. Urban,
- Daniel Ringwalt,
- John M. Urban,
- Wingel Xue,
- Ryan Gleason,
- Keji Zhao,
- and Xin Chen
Genome Res. January 2026 36: 83-101; Published in Advance December 10, 2025, doi:10.1101/gr.280809.125
.... Finally, we determine cell-type-specific replication timing profiles, integrating our in vivo data sets with published data using cultured cell lines. Our results reveal that GSC-like cells display a distinct replication program, compared with somatic lineages, that aligns with chromatin state differences...
OPEN ACCESS ARTICLE
Select this article
Research: The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution
- Xinghua Li,
- Judith E. Mank,
- and Liping Ban
Genome Res. July 2024 34: 997-1007; Published in Advance August 5, 2024, doi:10.1101/gr.278794.123
...distribution, with the greatest diversity in the tropics.Grasshoppers normally possess XX/X0 sex chromosomes (Mao et al. 2020). X0 sex determination systems are thought to derive from XY systems with highly differentiated X and Y Chromosomes in species in which sex is determined by X Chromosome dose rather...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Corcoran et al. 26 (4): 486.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: