Searching journal content for articles similar to Consortium 12 (2): 339.

Displaying results 1-9 of 9

For checked items

view abstracts
download to citation manager

Select this article
Resource: A calibrated human Y-chromosomal phylogeny based on resequencing
- Wei Wei,
- Qasim Ayub,
- Yuan Chen,
- Shane McCarthy,
- Yiping Hou,
- Ignazio Carbone,
- Yali Xue,
- and Chris Tyler-Smith
Genome Res. February 2013 23: 388-395; Published in Advance October 4, 2012, doi:10.1101/gr.143198.112
...J Phys Anthropol 146: 553–559. Karafet TM,Mendez FL,MeilermanMB,Underhill PA, Zegura SL,HammerMF. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree.Genome Res 18: 830–838. Li H, Ruan J, Durbin R. 2008. Mapping short DNA sequencing reads...
OPEN ACCESS ARTICLE
Select this article
RESOURCE: New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree
- Tatiana M. Karafet,
- Fernando L. Mendez,
- Monica B. Meilerman,
- Peter A. Underhill,
- Stephen L. Zegura,
- and Michael F. Hammer
Genome Res. May 2008 18: 830-838; Published in Advance April 2, 2008, doi:10.1101/gr.7172008
...genetics, and genealogical reconstruction. In 2002, the Y Chromosome Consortium published a single parsimony tree showing the relationships among 153 haplogroups based on 243 binary markers and devised a standardized nomenclature system to name lineages nested within this tree. Here we present...
Select this article
Research: A recent bottleneck of Y chromosome diversity coincides with a global change in culture
- Monika Karmin,
- Lauri Saag,
- Mário Vicente,
- Melissa A. Wilson Sayres,
- Mari Järve,
- Ulvi Gerst Talas,
- Siiri Rootsi,
- Anne-Mai Ilumäe,
- Reedik Mägi,
- Mario Mitt,
- Luca Pagani,
- Tarmo Puurand,
- Zuzana Faltyskova,
- Florian Clemente,
- Alexia Cardona,
- Ene Metspalu,
- Hovhannes Sahakyan,
- Bayazit Yunusbayev,
- Georgi Hudjashov,
- Michael DeGiorgio,
- Eva-Liis Loogväli,
- Christina Eichstaedt,
- Mikk Eelmets,
- Gyaneshwer Chaubey,
- Kristiina Tambets,
- Sergei Litvinov,
- Maru Mormina,
- Yali Xue,
- Qasim Ayub,
- Grigor Zoraqi,
- Thorfinn Sand Korneliussen,
- Farida Akhatova,
- Joseph Lachance,
- Sarah Tishkoff,
- Kuvat Momynaliev,
- François-Xavier Ricaut,
- Pradiptajati Kusuma,
- Harilanto Razafindrazaka,
- Denis Pierron,
- Murray P. Cox,
- Gazi Nurun Nahar Sultana,
- Rane Willerslev,
- Craig Muller,
- Michael Westaway,
- David Lambert,
- Vedrana Skaro,
- Lejla Kovačevic´,
- Shahlo Turdikulova,
- Dilbar Dalimova,
- Rita Khusainova,
- Natalya Trofimova,
- Vita Akhmetova,
- Irina Khidiyatova,
- Daria V. Lichman,
- Jainagul Isakova,
- Elvira Pocheshkhova,
- Zhaxylyk Sabitov,
- Nikolay A. Barashkov,
- Pagbajabyn Nymadawa,
- Evelin Mihailov,
- Joseph Wee Tien Seng,
- Irina Evseeva,
- Andrea Bamberg Migliano,
- Syafiq Abdullah,
- George Andriadze,
- Dragan Primorac,
- Lubov Atramentova,
- Olga Utevska,
- Levon Yepiskoposyan,
- Damir Marjanovic´,
- Alena Kushniarevich,
- Doron M. Behar,
- Christian Gilissen,
- Lisenka Vissers,
- Joris A. Veltman,
- Elena Balanovska,
- Miroslava Derenko,
- Boris Malyarchuk,
- Andres Metspalu,
- Sardana Fedorova,
- Anders Eriksson,
- Andrea Manica,
- Fernando L. Mendez,
- Tatiana M. Karafet,
- Krishna R. Veeramah,
- Neil Bradman,
- Michael F. Hammer,
- Ludmila P. Osipova,
- Oleg Balanovsky,
- Elza K. Khusnutdinova,
- Knut Johnsen,
- Maido Remm,
- Mark G. Thomas,
- Chris Tyler-Smith,
- Peter A. Underhill,
- Eske Willerslev,
- Rasmus Nielsen,
- Mait Metspalu,
- Richard Villems,
- and Toomas Kivisild
Genome Res. April 2015 25: 459-466; Published in Advance March 13, 2015, doi:10.1101/gr.186684.114
...that substantially increase the resolution of the internal branches of the Chr Y tree, we try to both incorporate the new information and to maintain the integrity and historical coherence of the initial YCC haplogroup nomenclature as introduced in 2002 and its updates (Jobling and Tyler-Smith 2003; Karafet et al...
Select this article
Resource: An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa
- Rosaria Scozzari,
- Andrea Massaia,
- Beniamino Trombetta,
- Giovanna Bellusci,
- Natalie M. Myres,
- Andrea Novelletto,
- and Fulvio Cruciani
Genome Res. March 2014 24: 535-544; Published in Advance January 6, 2014, doi:10.1101/gr.160788.113
...; Michaelson et al. 2012) with an excess of G>A andC>Tcomparedwith the opposite changes (Supplemental Table S5). A condensed version of the MP tree, with a particular emphasis on the deeply rooted African lineages, is shown in Figure 2. First, all Y chromosomes in our data set previously known to belong...
Select this article
INSIGHT/OUTLOOK: Why Names
- Francesc Calafell,
- David Comas,
- and Jaume Bertranpetit
Genome Res. February 1, 2002 12: 219-221; doi:10.1101/gr.226502
...chromosome genes. Proc. Natl. Acad. Sci. 97 : 7354 – 7359 . ↵ The Y Chromosome Consortium ( 2002 ) A nomenclature system for the tree of human Y-chromosome binary haplogroups. Genome Res. 12 : 339 – 348 . ↵ von Haeseler A. , Sajantila A. , Pääbo S. ( 1996 ) The genetical archaeology of the human . Nat Genet...
Select this article
LETTER: Dynamics of a Human Interparalog Gene Conversion Hotspot
- Elena Bosch,
- Matthew E. Hurles,
- Arcadi Navarro,
- and Mark A. Jobling
Genome Res. May 2004 14: 835-844; doi:10.1101/gr.2177404
.... ↵ Y Chromosome Consortium. 2002 . A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res. 12 : 339 -348. ↵ Yu, N., Zhao, Z., Fu, Y.X., Sambuughin, N., Ramsay, M., Jenkins, T., Leskinen, E., Patthy, L., Jorde, L.BL., Kuromori, T., et al. 2001 . Global patterns of human...
Select this article
LETTER: Origin and primary dispersal of the Mycobacterium tuberculosis Beijing genotype: Clues from human phylogeography
- Igor Mokrousov,
- Ho Minh Ly,
- Tatiana Otten,
- Nguyen Ngoc Lan,
- Boris Vyshnevskyi,
- Sven Hoffner,
- and Olga Narvskaya
Genome Res. October 2005 15: 1357-1364; Published in Advance September 16, 2005, doi:10.1101/gr.3840605
...was excluded from this analysis because of too small sample size; in addition, these strains were not confirmed by IS 6110 -RFLP typing to be truly unlinked strains ( Banu et al. 2004 ). The Neighbor-Joining (NJ) tree showed a topology that strikingly resembled geographical distances ( Fig. 4A ). It may...
Select this article
LETTER: Ethnic India: A Genomic View, With Special Reference to Peopling and Structure
- Analabha Basu,
- Namita Mukherjee,
- Sangita Roy,
- Sanghamitra Sengupta,
- Sanat Banerjee,
- Madan Chakraborty,
- Badal Dey,
- Monami Roy,
- Bidyut Roy,
- Nitai P. Bhattacharyya,
- Susanta Roychoudhury,
- and Partha P. Majumder
Genome Res. October 2003 13: 2277-2290; doi:10.1101/gr.1413403
...comprising several populations of the north is also observed. This cluster reflects the high frequencies of haplotypes belonging to HG-U in these populations. Using the 323 distinct HVS1 sequences, a neighbor-joining (NJ) tree was also constructed (data not shown). There was again no clustering...
Select this article
RESOURCE: A novel DNA sequence database for analyzing human demographic history
- Jeffrey D. Wall,
- Murray P. Cox,
- Fernando L. Mendez,
- August Woerner,
- Tesa Severson,
- and Michael F. Hammer
Genome Res. August 2008 18: 1354-1361; Published in Advance May 20, 2008, doi:10.1101/gr.075630.107
....M. , Hill, W.G. ( 2005 ) Measures of human population structure show heterogeneity among genomic regions . Genome Res. 15 : 1468 – 1476 . ↵ The Y Chromosome Consortium ( 2002 ) A nomenclature system for the tree of human Y-chromosomal binary haplogroups . Genome Res. 12 : 339 – 348 . ↵ Yu, N. , Chen, F...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Consortium 12 (2): 339.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: