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ARTICLE: Shuffling of Genes Within Low-Copy Repeats on 22q11 (LCR22) by Alu-Mediated Recombination Events During Evolution
- Melanie Babcock,
- Adam Pavlicek,
- Elizabeth Spiteri,
- Catherine D. Kashork,
- Ilya Ioshikhes,
- Lisa G. Shaffer,
- Jerzy Jurka,
- and Bernice E. Morrow
Genome Res. December 2003 13: 2519-2532; doi:10.1101/gr.1549503
...in the genome. The low-copy repeats on chromosome 22q11.2 (LCR22) are a complex mosaic of genes and pseudogenes formed by duplication processes; they mediate chromosome rearrangements associated with velo-cardio-facial syndrome/DiGeorge syndrome, der(22) syndrome, and cat-eye syndrome. The ability to trace...
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INSIGHT/OUTLOOK: Masquerading Repeats: Paralogous Pitfalls of the Human Genome
- Evan E. Eichler
Genome Res. August 1, 1998 8: 758-762; doi:10.1101/gr.8.8.758
...locations of known intrachromosomally duplicated gene segments are shown as solid boxes in relation to genetic markers of these regions. More intrachromosomal duplicated copies of the GGT-like repeat block [which consists of variable smaller repeat units of the γ-glutamyl transferase ( GGT ) and breakpoint...
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LETTER: Two Functional Copies of the DGCR6 Gene Are Present on Human Chromosome 22q11 Due to a Duplication of an Ancestral Locus
- Lisa Edelmann,
- Pavel Stankiewicz,
- Elizabeth Spiteri,
- Raj K. Pandita,
- Lisa Shaffer,
- James Lupski,
- and Bernice E. Morrow
Genome Res. February 1, 2001 11: 208-217; Published in Advance January 18, 2001, doi:10.1101/gr.143101
...) Molecular definition of 22q11 deletions in 151 velo-cardio-facial syndrome patients. Amer. J. Hum. Genet. 61 : 620 – 629 . ↵ Collins J.E. , Mungall A.J. , Badcock K.L. , Fay J.M. , Dunham I. ( 1997 ) The organization of the gamma-glutamyl transferase genes and other low copy repeats in human chromosome 22q...
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RESEARCH: Duplications on Human Chromosome 22 Reveal a Novel Ret Finger Protein-Like Gene Family with Sense and Endogenous Antisense Transcripts
- Eyal Seroussi,
- Darek Kedra,
- Hua-Qin Pan,
- Myriam Peyrard,
- Charles Schwartz,
- Peter Scambler,
- Dian Donnai,
- Bruce A. Roe,
- and Jan P. Dumanski
Genome Res. September 1, 1999 9: 803-814; doi:10.1101/gr.9.9.803
...of this chromosome will soon emerge, the number of characterized duplications on 22q is likely to increase significantly. The link between the presence of low copy repeats and genetic disease seems well established. On chromosome 22, a majority of dispersed, low copy repeats were so far reported in 22q11 region...
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CORRECTION: Corrections for vol. 7, p. 522 Genome Res. September 1, 1997 7: 942

...1549-5469 1088-9051 genome;7/9/942 Corrections for vol. 7, p. 522 Corrections for vol. 7, p. 522 Genome Research 7: 522–531 The Organization of the γ-Glutamyl Transferase Genes and Other Low Copy Repeats in Human Chromosome 22q11 John E. Collins, Andrew J. Mungall, Karen L. Badcock, Joanne M. Fay...
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LETTER: Genome Analysis of F. nucleatum sub spp vincentii and Its Comparison With the Genome of F. nucleatum ATCC 25586
- Vinayak Kapatral,
- Natalia Ivanova,
- Iain Anderson,
- Gary Reznik,
- Anamitra Bhattacharyya,
- Warren L. Gardner,
- Natalia Mikhailova,
- Alla Lapidus,
- Niels Larsen,
- Mark D'Souza,
- Theresa Walunas,
- Robert Haselkorn,
- Ross Overbeek,
- and Nikos Kyrpides
Genome Res. June 2003 13: 1180-1189; doi:10.1101/gr.566003
...of restriction-modification systems have been identified in FNV. ORFs for ethanolamine utilization, thermostable carboxypeptidase, γ glutamyl-transpeptidase, and deblocking aminopeptidases are absent from FNV. FNV, like FN, lacks the classical catalase-peroxidase system, but thioredoxin/glutaredoxin enzymes...
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LETTER: Structure of the Highly Conserved HERC2 Gene and of Multiple Partially Duplicated Paralogs in Human
- Yonggang Ji,
- Nancy A. Rebert,
- John M. Joslin,
- Michael J. Higgins,
- Roger A. Schultz,
- and Robert D. Nicholls
Genome Res. March 1, 2000 10: 319-329; doi:10.1101/gr.10.3.319
..., Dallas, Texas 75235 USA; 2Department of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, New York 14263 USA Abstract Recombination between chromosome-specific low-copy repeats (duplicons) is an underlying mechanism for several genetic disorders. Recently, a chromosome 15 duplicon...
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LETTER: Protein Coding Palindromes Are a Unique but Recurrent Feature in Rickettsia
- Hiroyuki Ogata,
- Stéphane Audic,
- Chantal Abergel,
- Pierre-Edouard Fournier,
- and Jean-Michel Claverie
Genome Res. May 1, 2002 12: 808-816; Published in Advance April 12, 2002, doi:10.1101/gr.227602
.....159 1OCC/ Bos taurus era (RC0158) GTP-binding protein RPG-SYO-E 1017 10..144 1EGA/ Escherichia coli gltX (RC0966) Glutamyl-tRNA synthetase RPGCSYOAE 1539 1006..1149 1GLN/ Thermus thermophilus gmk (RC1194) Guanylate kinase RPGC-YO-E 687 19..126 1GKY/ Saccharomyces cerevisiae hemC (RC0706...
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ARTICLE: Tropheryma whipplei Twist: A Human Pathogenic Actinobacteria With a Reduced Genome
- Didier Raoult,
- Hiroyuki Ogata,
- Stéphane Audic,
- Catherine Robert,
- Karsten Suhre,
- Michel Drancourt,
- and Jean-Michel Claverie
Genome Res. August 2003 13: 1800-1809; doi:10.1101/gr.1474603
...RSs). All amino acids are represented among these aaRSs, except for glutamine and asparagine. The gatCAB operon for the glutamyl-tRNAGln amidotransferase found in the probably compensates for the lack of glutaminyl-tRNA synthetase (GlnRS) and asparaginyl-tRNA synthetase (AsnRS), as in Chlamydia trachomatis...
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LETTER: The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403
- Alexander Bolotin,
- Patrick Wincker,
- Stéphane Mauger,
- Olivier Jaillon,
- Karine Malarme,
- Jean Weissenbach,
- S. Dusko Ehrlich,
- and Alexei Sorokin
Genome Res. May 1, 2001 11: 731-753; Published in Advance April 11, 2001, doi:10.1101/gr.169701
...of the IS elements are not randomly distributed over the chromosome (Fig. 1 ). Seven copies of IS1077 (and the associated IS904) occupy the region between 2150 and 840 kb, encompassing the replication origin, whereas 15 copies of IS983 occupy a different region, between 680 and 2270 kb. The two regions overlap...

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