Searching journal content for articles similar to Cochran et al. 32 (3): 512.

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  1. Method: Semisupervised adversarial neural networks for single-cell classification
    • Jacob C. Kimmel and
    • David R. Kelley
    Genome Res. October 2021 31: 1781-1793; Published in Advance February 24, 2021, doi:10.1101/gr.268581.120
    ...with MixMatch and training with a domain adversary improved model performance across multiple tasks (Fig. 6B; Supplemental Fig. S16). We hypothesized that scNym models might benefit from domain adaptation through the adversarial model by integrating the cells into a latent space more effectively...
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  2. Method: Iterative improvement of deep learning models using synthetic regulatory genomics
    • André M. Ribeiro-dos-Santos and
    • Matthew T. Maurano
    Genome Res. November 2025 35: 2539-2549; Published in Advance October 22, 2025, doi:10.1101/gr.280540.125
    .... Domain-adaptive neural networks improve cross-species prediction of transcription factor binding. Genome Res 32: 512–523. doi:10.1101/gr.275394.121 ↵de Boer CG, Taipale J. 2024. Hold out the : a roadmap to solving the cis-regulatory code. Nature 625: 41–50. doi:10.1038/s41586-023-06661-w ↵Dey KK, van de...
  3. LETTER: Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity
    • Shengfeng Huang,
    • Shaochun Yuan,
    • Lei Guo,
    • Yanhong Yu,
    • Jun Li,
    • Tao Wu,
    • Tong Liu,
    • Manyi Yang,
    • Kui Wu,
    • Huiling Liu,
    • Jin Ge,
    • Yingcai Yu,
    • Huiqing Huang,
    • Meiling Dong,
    • Cuiling Yu,
    • Shangwu Chen,
    • and Anlong Xu
    Genome Res. July 2008 18: 1112-1126; Published in Advance June 18, 2008, doi:10.1101/gr.069674.107
    .... As for incorrect predictions, we also did not discriminate them unless they posed a problem for reliable analysis. Prior to detailed analysis, we presented a cross-species comparison of the immune-related protein domains (Supplemental Table S1), a summary of the immune gene repertoire ( Table 1 ), and a list...
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