Searching journal content for articles similar to Claustres et al. 12 (5): 680.

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  1. Review: A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
    • Andrew D. Bates,
    • Dawid Grzela,
    • Maciej Studzian,
    • Louise Brennan,
    • Moli Williams,
    • Conor Fawcett,
    • Beth Hammond,
    • Manreen Grewal,
    • Marcin Ratajewski,
    • Lukasz Pulaski,
    • and Urszula L. McClurg
    Genome Res. March 2026 36: 433-459; Published in Advance February 17, 2026, doi:10.1101/gr.281154.125
    ...and is susceptible to splice variant “blindness.” Human cancer is especially rich in variations, including coding region mutations of TF genes; these features can sometimes offer similar insights as knockdown/knockout experiments. The Eukaryotic Promoter Database has the SNP2TFBS subdatabase linking genetic variants...
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  2. Research: De novo rates and selection of large copy number variation
    • Andy Itsara,
    • Hao Wu,
    • Joshua D. Smith,
    • Deborah A. Nickerson,
    • Isabelle Romieu,
    • Stephanie J. London,
    • and Evan E. Eichler
    Genome Res. November 2010 20: 1469-1481; Published in Advance September 14, 2010, doi:10.1101/gr.107680.110
    ...an average of 8–25 kbp de novo CNV sequence per . Thus, although de novo CNVs occur at lower overall frequency than point mutations, about 100-fold more base pairs of sequence are affected per generation. A comparison between the chimpanzee and human s reported only a fourfold difference in the number of CNV...
  3. Methods: Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network
    • Ivan Iossifov,
    • Tian Zheng,
    • Miron Baron,
    • T. Conrad Gilliam,
    • and Andrey Rzhetsky
    Genome Res. July 2008 18: 1150-1162; Published in Advance April 16, 2008, doi:10.1101/gr.075622.107
    ...the cluster probabilities. The set of families affected by the same disease under this model is a mixture of families that are predisposed to the disease via mutations at different genes that belong to C . Under these assumptions, we combine the molecular-interaction network in the GeneWays 6.0 database...
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  4. LETTER: Widespread balancing selection and pathogen-driven selection at blood group antigen genes
    • Matteo Fumagalli,
    • Rachele Cagliani,
    • Uberto Pozzoli,
    • Stefania Riva,
    • Giacomo P. Comi,
    • Giorgia Menozzi,
    • Nereo Bresolin,
    • and Manuela Sironi
    Genome Res. February 2009 19: 199-212; Published in Advance November 7, 2008, doi:10.1101/gr.082768.108
    ...the discovery of the ABO blood group in 1900 by Karl Landsteiner, as many as 29 blood group (BG) systems have been identified in humans (Blood Group Antigen Gene Mutation Database, BGMUT [ Blumenfeld and Patnaik 2004 ]). Each system is specified by a blood group antigen (BGA) constituted by a protein...
  5. LETTER: Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
    • Deyou Zheng,
    • Adam Frankish,
    • Robert Baertsch,
    • Philipp Kapranov,
    • Alexandre Reymond,
    • Siew Woh Choo,
    • Yontao Lu,
    • France Denoeud,
    • Stylianos E. Antonarakis,
    • Michael Snyder,
    • Yijun Ruan,
    • Chia-Lin Wei,
    • Thomas R. Gingeras,
    • Roderic Guigó,
    • Jennifer Harrow,
    • and Mark B. Gerstein
    Genome Res. June 2007 17: 839-851; doi:10.1101/gr.5586307
    ...of 160 pseudogenes (49 nonprocessed and 111 processed) with locus-specific RACE/microarray analysis ( Kapranov et al. 2005 ) using poly(A)+ RNA from 12 tissues. In 51 cases (26 nonprocessed and 25 processed pseudogenes), we were able to design pseudogene locus-specific 5′-RACE primers, which typically...
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