Searching journal content for articles similar to Chung et al. 21 (2): 286.

Displaying results 1-10 of 12
For checked items
  1. Research: Discovery of hundreds of mirtrons in mouse and human small RNA data
    • Erik Ladewig,
    • Katsutomo Okamura,
    • Alex S. Flynt,
    • Jakub O. Westholm,
    • and Eric C. Lai
    Genome Res. September 2012 22: 1634-1645; doi:10.1101/gr.133553.111
    ...(Yang and Lai 2011). The most prevalent alternative pathway involves short hairpin introns known as mirtrons (Fig. 1) that serve as pre-miRNA mimics (Westholm and Lai 2011). The biochemical and functional properties of mirtrons have been studied most carefully in Drosophila (Okamura et al. 2007; Ruby et...
    OPEN ACCESS ARTICLE
  2. Research: Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus
    • Jaaved Mohammed,
    • Alex S. Flynt,
    • Alexandra M. Panzarino,
    • Md Mosharrof Hossain Mondal,
    • Matthew DeCruz,
    • Adam Siepel,
    • and Eric C. Lai
    Genome Res. January 2018 28: 52-65; Published in Advance December 12, 2017, doi:10.1101/gr.226068.117
    ...studies show that miRNA subclasses exhibit distinct evolutionary parameters (Mohammed et al. 2013, 2014a,b). For example, mirtrons evolve more quickly than canonical miRNAs in both Drosophila (Berezikov et al. 2010) and in mammals (Wen et al. 2015), and studies in D. melanogaster identified...
  3. Research: Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    • Eugene Berezikov,
    • Nicolas Robine,
    • Anastasia Samsonova,
    • Jakub O. Westholm,
    • Ammar Naqvi,
    • Jui-Hung Hung,
    • Katsutomo Okamura,
    • Qi Dai,
    • Diane Bortolamiol-Becet,
    • Raquel Martin,
    • Yongjun Zhao,
    • Phillip D. Zamore,
    • Gregory J. Hannon,
    • Marco A. Marra,
    • Zhiping Weng,
    • Norbert Perrimon,
    • and Eric C. Lai
    Genome Res. February 2011 21: 203-215; Published in Advance December 22, 2010, doi:10.1101/gr.116657.110
    ...Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence Eugene Berezikov 1 , Nicolas Robine 2 , Anastasia Samsonova 3 , Jakub O. Westholm 2 , Ammar Naqvi 2 , Jui-Hung Hung...
    OPEN ACCESS ARTICLE
  4. Resource: Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    • Jiayu Wen,
    • Jaaved Mohammed,
    • Diane Bortolamiol-Becet,
    • Harrison Tsai,
    • Nicolas Robine,
    • Jakub O. Westholm,
    • Erik Ladewig,
    • Qi Dai,
    • Katsutomo Okamura,
    • Alex S. Flynt,
    • Dayu Zhang,
    • Justen Andrews,
    • Lucy Cherbas,
    • Thomas C. Kaufman,
    • Peter Cherbas,
    • Adam Siepel,
    • and Eric C. Lai
    Genome Res. July 2014 24: 1236-1250; Published in Advance July 1, 2014, doi:10.1101/gr.161554.113
    ...data provide comprehensive information on the transcriptional landscape of diverse Drosophila cell lines. These data should encourage broader usage of fly cell lines, beyond the few that are presently in common usage. [Supplemental material is available for this article.] Drosophila melanogaster...
    OPEN ACCESS ARTICLE
  5. 12 Drosophila Genomes/Letter: Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    • J. Graham Ruby,
    • Alexander Stark,
    • Wendy K. Johnston,
    • Manolis Kellis,
    • David P. Bartel,
    • and Eric C. Lai
    Genome Res. December 2007 17: 1850-1864; Published in Advance November 7, 2007, doi:10.1101/gr.6597907
    ...computational methods to predict miRNAs conserved among Drosophila species and large-scale sequencing of small RNAs from Drosophila melanogaster to experimentally confirm and complement these predictions. In addition to validating 20 of our top 45 predictions for novel miRNA loci, the large-scale sequencing...
    OPEN ACCESS ARTICLE
  6. Letter: Repertoire and evolution of miRNA genes in four divergent nematode species
    • Elzo de Wit,
    • Sam E.V. Linsen,
    • Edwin Cuppen,
    • and Eugene Berezikov
    Genome Res. November 2009 19: 2064-2074; Published in Advance September 15, 2009, doi:10.1101/gr.093781.109
    ...for their identification (Berezikov et al. 2006b). However, even when considering these additional novel nonconserved candidate miRNAs in C. elegans miRNAs, the miRNA birth rate in the nematodes would still appear to be three- to fourfold lower than in the Drosophila species. Comparison of miRNA expression levels between...
  7. Research: High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    • Zhen Shi,
    • Taiowa A. Montgomery,
    • Yan Qi,
    • and Gary Ruvkun
    Genome Res. March 2013 23: 497-508; Published in Advance January 30, 2013, doi:10.1101/gr.149112.112
    ...be advantageous in an arms race against invading nucleic acids. We found that gonochoristic species that mate at every generation possess much larger numbers of piRNAs than androdioecious species that primarily self-fertilize. In Drosophila, maternally deposited piRNAs can silence paternal transposons (Brennecke...
  8. Resource: The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting
    • Lishi Li,
    • Yulong Song,
    • Xinrui Shi,
    • Jianheng Liu,
    • Shaolei Xiong,
    • Wanying Chen,
    • Qiang Fu,
    • Zichao Huang,
    • Nannan Gu,
    • and Rui Zhang
    Genome Res. January 2018 28: 132-143; Published in Advance December 12, 2017, doi:10.1101/gr.224386.117
    ...selected human and two animal models (mouse and Drosophila melanogaster [D.mel], in which the ADAR mutant phenotypes were extensively studied) for RNA editing profiling. A human–mouse comparison will shed light on the miRNA editing dynamics and evolution in mammals. Additionally, the miRNA editing profiles...
  9. Research: Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
    • Joanne L. Harding,
    • Stuart Horswell,
    • Claire Heliot,
    • Javier Armisen,
    • Lyle B. Zimmerman,
    • Nicholas M. Luscombe,
    • Eric A. Miska,
    • and Caroline S. Hill
    Genome Res. January 2014 24: 96-106; Published in Advance September 24, 2013, doi:10.1101/gr.144469.112
    ...sequenced inDrosophila,Caenorhabditis elegans, mouse oocytes, and embryonic stem cells, and most recently in Xenopus tropicalis (Hamilton and Baulcombe 1999; Ambros et al. 2003b; Babiarz et al. 2008; Czech et al. 2008;Watanabe et al. 2008; Armisen et al. 2009). In a number of organisms they have also been...
    OPEN ACCESS ARTICLE
  10. Resource: Dynamics of microRNA expression during mouse prenatal development
    • Sorena Rahmanian,
    • Rabi Murad,
    • Alessandra Breschi,
    • Weihua Zeng,
    • Mark Mackiewicz,
    • Brian Williams,
    • Carrie A. Davis,
    • Brian Roberts,
    • Sarah Meadows,
    • Dianna Moore,
    • Diane Trout,
    • Chris Zaleski,
    • Alex Dobin,
    • Lei-Hoon Sei,
    • Jorg Drenkow,
    • Alex Scavelli,
    • Thomas R. Gingeras,
    • Barbara J. Wold,
    • Richard M. Myers,
    • Roderic Guigó,
    • and Ali Mortazavi
    Genome Res. November 2019 29: 1900-1909; Published in Advance October 23, 2019, doi:10.1101/gr.248997.119
    ...miRNAs detected (Fig. 1B). This result is in contrast to the finding that the absolute numbers of expressed miRNAs increase over the developmental time in other model organisms such as Drosophila melanogaster (Ninova et al. 2014). At the organ level, we find that the nervous system samples show...
    OPEN ACCESS ARTICLE
For checked items

Search Results

Next 2 » New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research