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Research: Genome-wide promoter assembly in E. coli measured at single-base resolution
- Jordan John,
- Javaid Jabbar,
- Nitika Badjatia,
- Matthew J. Rossi,
- William K.M. Lai,
- and B. Franklin Pugh
Genome Res. May 2022 32: 878-892; Published in Advance April 28, 2022, doi:10.1101/gr.276544.121
...of the epigenomic organization of the Escherichia coli transcription machinery and nucleoid structural proteins at the time when cells are growing exponentially and upon rapid reprogramming (acute heat shock). We examined the site specificity of three sigma factors (RpoD/σ70, RpoH/σ32, and RpoN/σ54), RNA polymerase...
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Resource: Structural and operational complexity of the Geobacter sulfurreducens genome
- Yu Qiu,
- Byung-Kwan Cho,
- Young Seoub Park,
- Derek Lovley,
- Bernhard Ø. Palsson,
- and Karsten Zengler
Genome Res. September 2010 20: 1304-1311; Published in Advance June 30, 2010, doi:10.1101/gr.107540.110
..., Davis M, Stolz JF, McInerney MJ. 1994. Geobacter sulfurreducens sp. nov., a hydrogen- and acetateoxidizing dissimilatory metal-reducing microorganism. Appl Environ Microbiol 60: 3752–3759. Cho BK, Knight EM, Barrett CL, Palsson BO. 2008a. Genome-wide analysis of Fis binding in Escherichia coli indicates...

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