Searching journal content for articles similar to Chiu et al. 14 (1): 11.

Displaying results 1-10 of 6320

For checked items

view abstracts
download to citation manager

Select this article
Research: Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility
- Dongying Xie,
- Pohao Ye,
- Yiming Ma,
- and Zhongying Zhao
Genome Res. March 2026 36: 506-521; Published in Advance February 17, 2026, doi:10.1101/gr.280885.125
...a cluster on the right arm of Chr IV (Fig. 6B). Although the genomic regions surrounding this gene cluster show lower conservation (i.e., reduced phyloP scores) than those flanking Cni-neib-1, the syntenic genes bordering both regions remain conserved (Fig. 6B). This conservation suggests that the fbxn...
Select this article
Research: Degrees of convergent evolution in rodent adaptations to arid environments
- Domitille Chalopin,
- Carine Rey,
- Jeremy Ganofsky,
- Juliana Blin,
- Pascale Chevret,
- Marion Mouginot,
- Laurent Guéguen,
- Bastien Boussau,
- Sophie Pantalacci,
- and Marie Sémon
Genome Res. March 2026 36: 472-486; Published in Advance January 21, 2026, doi:10.1101/gr.280089.124
...and the amount of genomic convergence. To our knowledge, we so far lacked study designs that could quantify genomic convergence accounting for both species relatedness and age of transition.Rodentia is the most diversified order of mammals with living representatives spanning 70 million years (MY) of evolution...
OPEN ACCESS ARTICLE
Select this article
Research: Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization
- Kazuaki Yamaguchi,
- Yoshinobu Uno,
- Mitsutaka Kadota,
- Osamu Nishimura,
- Ryo Nozu,
- Kiyomi Murakumo,
- Rui Matsumoto,
- Keiichi Sato,
- and Shigehiro Kuraku
Genome Res. September 2023 33: 1527-1540; Published in Advance August 17, 2023, doi:10.1101/gr.276840.122
...in the retrieval of the Hox C cluster, an array of homeobox-containing genes (for review, see Kuraku 2021). While their Hox A, B, and D gene clusters have been reliably assembled with few gaps (Mulley et al. 2009; Hara et al. 2018), assembling the Hox C cluster, which was initially reported as missing from...
OPEN ACCESS ARTICLE
Select this article
Method: Automated interpretable artificial intelligence genomic prediction with AlGP
- Lei Wei,
- Ziqin Jiang,
- Baoliang Fan,
- Yidan Yan,
- Zhenqiang Xu,
- Xiaoxiang Hu,
- and Yuzhe Wang
Genome Res. March 5, 2026 ; Published in Advance March 5, 2026, doi:10.1101/gr.281006.125
...) Heat map illustrating the distribution of features across clustered samples. The x-axis corresponds to the 500 samples, and the y-axis denotes the features. (E) Characteristic attributes in SHAP are represented on a beeswarm plot, with each line corresponding to a specific SNP feature. Genotypes...
Select this article
Research: Comprehensive functional annotation of ESR1-driven enhancers in breast cancer reveals hierarchical activity independent of genomic and epigenomic contexts
- Yanis Zekri,
- Sebastian Gregoricchio,
- Elif Yapıcı,
- Chia-Chi Flora Huang,
- Tunç Morova,
- Umut Berkay Altıntaş,
- Gozde Korkmaz,
- Nathan A. Lack,
- and Wilbert Zwart
Genome Res. July 2025 35: 1530-1543; Published in Advance June 10, 2025, doi:10.1101/gr.280320.124
...IP-seq data sets from the Cistrome Data Browser (Taing et al. 2024), covering a range of conditions (estrogen-depleted, E2-treated, full-medium), and overlapped them with our ERBS categories. Unsupervised clustering confirmed that only active histone modifications overlapped ERBS, with a notable enrichment...
Select this article
Research: Transposable elements contribute to the evolution of host shift–related genes in cactophilic Drosophila species
- Daniel Siqueira de Oliveira,
- Anaïs Larue,
- William Vilas Boas Nunes,
- Francois Sabot,
- Alejandra Bodelón,
- María Pilar García Guerreiro,
- Cristina Vieira,
- and Claudia Marcia Aparecida Carareto
Genome Res. March 2026 36: 487-505; Published in Advance February 10, 2026, doi:10.1101/gr.280463.125
...Stenocereus gummosus, and D. m. sonorensis is also a columnar cacti dweller, using Stenocereus thurberi (Newby and Etges 1998). Therefore, this set of species from the buzzatii and mojavensis clusters provides an excellent model to investigate the molecular mechanisms underlying host shift evolution...
Select this article
Method: Gene duplication is associated with gene diversification and potential neofunctionalization in lung cancer evolution
- Paul Ashford,
- Alexander M. Frankell,
- Zofia Piszka,
- Camilla S.M. Pang,
- Mahnaz Abbasian,
- Maise Al Bakir,
- Mariam Jamal-Hanjani,
- Nicholas McGranahan,
- Charles Swanton,
- and Christine A. Orengo
Genome Res. March 2026 36: 561-577; Published in Advance February 19, 2026, doi:10.1101/gr.278663.123
...function. Mutations are analyzed using paralogs grouped into functional families with highly similar functions, identifying 355 functional impact events (FIEs) through their proximity and clustering near to functional sites. The use of functional family paralogs to map mutations to protein structures from...
OPEN ACCESS ARTICLE
Select this article
Research: Genomic regulatory landscape underlying the antiviral response of Atlantic salmon
- Shahmir Naseer,
- Thomas C Clark,
- Bertrand Collet,
- Pooran Dewari,
- Damir Baranasic,
- Daniel J Macqueen,
- Pierre Boudinot,
- and Samuel A.M. Martin
Genome Res. October 22, 2025 gr.280579.125; Published in Advance October 22, 2025, doi:10.1101/gr.280579.125
...exhibit 532 heterogeneous distribution patterns, with some, such as finTRIMs, in gene groups dispersed 533 across the while others, including MHC class I genes, form a few or a unique cluster 534 on a specific location (Van der Aa et al., 2009; Lukacs et al., 2010). These findings 535 underscore...
- Abstract
- Full Text (PDF)
OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
Select this article
Mini-Review: Evolution of genome-wide methylation profiling technologies
- Carolina Montano and
- Winston Timp
Genome Res. April 2025 35: 572-582; doi:10.1101/gr.278407.123
...of the fifth carbon atom of cytosine, typically in mammals in a CG dinucleotide context. This dinucleotide is depleted largely across the and found predominantly in clusters known as “CpG islands” (Bird 1986). Cytosine methylation is catalyzed by methyltransferases (e.g., DNMT1, DNMT3A) that transfer a methyl...
OPEN ACCESS ARTICLE
Select this article
Resource: Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease
- Kangli Wang,
- Weikun Xia,
- Yingli Gu,
- Songpeng Zu,
- Qian Yang,
- Maria Luisa Amaral,
- Yaozhi Wang,
- Allen Wang,
- Xiang-Dong Fu,
- William C. Mobley,
- and Bing Ren
Genome Res. March 4, 2026 ; Published in Advance March 4, 2026, doi:10.1101/gr.281113.125
...score and fragment count in the ATACmodality using SnapATAC2 (Zhang et al. 2024a; Methods; Supplemental Fig. S1). Potential doublets were also excluded, resulting in 40,125 highquality cells retained for further analysis. Next, we performed iterative clustering using the RNA modality and integrated...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Chiu et al. 14 (1): 11.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: