Searching journal content for articles similar to Cheng et al. 18 (12): 1896.

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  1. Article: Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
    • Yong Cheng,
    • Weisheng Wu,
    • Swathi Ashok Kumar,
    • Duonan Yu,
    • Wulan Deng,
    • Tamara Tripic,
    • David C. King,
    • Kuan-Bei Chen,
    • Ying Zhang,
    • Daniela Drautz,
    • Belinda Giardine,
    • Stephan C. Schuster,
    • Webb Miller,
    • Francesca Chiaromonte,
    • Yu Zhang,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2009 19: 2172-2184; Published in Advance November 3, 2009, doi:10.1101/gr.098921.109
    ...transcription factors, and the effects of histone modifications, are poorly understood. We studied these problems genome-wide in a Gata1 knockout erythroblast cell line that undergoes GATA1-dependent terminal maturation, identifying 2616 GATA1-responsive genes and 15,360 GATA1-occupied DNA segments after...
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  2. Resource: PRISM offers a comprehensive genomic approach to transcription factor function prediction
    • Aaron M. Wenger,
    • Shoa L. Clarke,
    • Harendra Guturu,
    • Jenny Chen,
    • Bruce T. Schaar,
    • Cory Y. McLean,
    • and Gill Bejerano
    Genome Res. May 2013 23: 889-904; Published in Advance February 4, 2013, doi:10.1101/gr.139071.112
    ..., high-quality library from more than 800 public transcription factor motifs, covering all major DNA binding domains, and predict 3.3 million binding sites for all factors across the human and mouse s. We then place GREAT (McLean et al. 2010), a tool for functional analysis of a set of cis...
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  3. Research: Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
    • Weisheng Wu,
    • Yong Cheng,
    • Cheryl A. Keller,
    • Jason Ernst,
    • Swathi Ashok Kumar,
    • Tejaswini Mishra,
    • Christapher Morrissey,
    • Christine M. Dorman,
    • Kuan-Bei Chen,
    • Daniela Drautz,
    • Belinda Giardine,
    • Yoichiro Shibata,
    • Lingyun Song,
    • Max Pimkin,
    • Gregory E. Crawford,
    • Terrence S. Furey,
    • Manolis Kellis,
    • Webb Miller,
    • James Taylor,
    • Stephan C. Schuster,
    • Yu Zhang,
    • Francesca Chiaromonte,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. October 2011 21: 1659-1671; Published in Advance July 27, 2011, doi:10.1101/gr.125088.111
    ...) The proportion of each state on the in the two cell lines. (D) Changes in chromatin state between G1E and G1E-ER4+E2 cells for DNA segments occupied by GATA1 in the latter cells. Each GATA1 occupied segment was assigned to the predominant chromatin state in each cell line. The numbers of GATA1 occupied segments...
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