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Research: Functional genomics analysis of developing zebrafish and human endoderm reveals highly conserved cis-regulatory modules acting during vertebrate organogenesis
- Daniela M Riley,
- Randa Elsayed,
- Mark D Walsh,
- Simaran Johal,
- Ying Lin,
- Harry Walton,
- Till Bretschneider,
- Sascha Ott,
- and Andrew C Nelson
Genome Res. March 4, 2026 gr.280838.125; Published in Advance March 4, 2026, doi:10.1101/gr.280838.125
...proliferation in the hindbrain 312 in zebrafish (Coolen et al. 2012). As we discuss later, it is therefore highly likely that the 313 significant enrichment for terms associated with the nervous system can be attributed to 314 common neuro-pancreatic gene regulatory programmes operating across the developing...
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Resource: A single-cell transcriptome atlas of the maturing zebrafish telencephalon
- Shristi Pandey,
- Anna J. Moyer,
- and Summer B. Thyme
Genome Res. April 2023 33: 658-671; Published in Advance April 18, 2023, doi:10.1101/gr.277278.122
...telencephalic cell types is still missing.The aim of this study is to use single-cell RNA-seq across life stages to obtain a comprehensive picture of the transcriptionally distinct cell types of the zebrafish pallium and subpallium.ResultsIntegrated graph clustering identifies cell types in the zebrafish...

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