Searching journal content for articles similar to Chen et al. 32 (5): 825.

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  1. Research: A unique H3K4me2 profile marks tissue-specific gene regulation
    • Aleksandra Pekowska,
    • Touati Benoukraf,
    • Pierre Ferrier,
    • and Salvatore Spicuglia
    Genome Res. November 2010 20: 1493-1502; Published in Advance September 14, 2010, doi:10.1101/gr.109389.110
    ..., Beare DM, Fowler JC, Couttet P, et al. 2007. The landscape of histone modifications across 1% of the human in five human cell lines. Genome Res 17: 691–707. Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J. 2009. Differential chromatin marking of introns and expressed exons by H3K36me3...
  2. Research: The gene repressor complex NuRD interacts with the histone variant H3.3 at promoters of active genes
    • Daniel C. Kraushaar,
    • Zuozhou Chen,
    • Qingsong Tang,
    • Kairong Cui,
    • Junfang Zhang,
    • and Keji Zhao
    Genome Res. November 2018 28: 1646-1655; Published in Advance September 25, 2018, doi:10.1101/gr.236224.118
    ...). Despite efficient reduction in H3.3 protein, we observed modest but reproducible decreases in H2A.Z and histone marks that typically associate with H3.3, such as H3K36me3, H3K9ac, and H3K27ac. We observed no changes in H3K9me3 between wild-type and H3.3 knockdown lysates (Fig. 5B). Comparison of MTA1...
  3. Method: ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
    • Piotr J. Balwierz,
    • Mikhail Pachkov,
    • Phil Arnold,
    • Andreas J. Gruber,
    • Mihaela Zavolan,
    • and Erik van Nimwegen
    Genome Res. May 2014 24: 869-884; Published in Advance February 10, 2014, doi:10.1101/gr.169508.113
    ...axis; and the activation-associated marks H3K4me3, H3K4me2, H3K9ac, H3K27ac, and H3K36me3 also all have a strong positive component in this vector, whereas the known repressive mark H3K27me3 has a negative component. These findings strongly suggest that variation along the first principal vector...
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  4. Research: Global variability in gene expression and alternative splicing is modulated by mitochondrial content
    • Raul Guantes,
    • Alberto Rastrojo,
    • Ricardo Neves,
    • Ana Lima,
    • Begoña Aguado,
    • and Francisco J. Iborra
    Genome Res. May 2015 25: 633-644; Published in Advance March 23, 2015, doi:10.1101/gr.178426.114
    ...acetylation variation (Fig. 2A). Other modifications associated with chromatin activation are histone H3 dimethylated at lysine 36 (H3K36me2) and histone H3 trimethylated at lysine 4 (H3K4me3)—the first associated with transcription elongation and the latter to promoter activation (Henikoff and Shilatifard...
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