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Research: Nucleosomal signatures impose nucleosome positioning in coding and noncoding sequences in the genome
- Sara González,
- Alicia García,
- Enrique Vázquez,
- Rebeca Serrano,
- Mar Sánchez,
- Luis Quintales,
- and Francisco Antequera
Genome Res. November 2016 26: 1532-1543; Published in Advance September 23, 2016, doi:10.1101/gr.207241.116
...of 154 bp or 167 bp, respectively (Lantermann et al. 2010). Different sequence requirements between the two yeasts are also present at nucleosome-depleted regions in promoters. They are enriched in poly dA:dT elements in S. cerevisiae (Iyer and Struhl 1995; Zhang et al. 2011b), whereas they are not in S...
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Method: Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler
- Jeffrey N. McKnight,
- Toshio Tsukiyama,
- and Gregory D. Bowman
Genome Res. May 2016 26: 693-704; Published in Advance March 18, 2016, doi:10.1101/gr.199919.115
...or Tup1/Cyc8 (Goldmark et al. 2000; Fazzio et al. 2001; Kent et al. 2001; Zhang and Reese 2004a,b; Hanlon et al. 2011; Rizzo et al. 2011). On a global scale, Isw2 localizes nonspecifically to nucleosome-depleted regions (NDRs) to affect nucleosomes within gene bodies (Zentner et al. 2013), enriches...

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