Searching journal content for articles similar to Chen et al. 14 (4): 679.

Displaying results 1-10 of 11

For checked items

view abstracts
download to citation manager

Select this article
RESOURCE: The Atlas Genome Assembly System
- Paul Havlak,
- Rui Chen,
- K. James Durbin,
- Amy Egan,
- Yanru Ren,
- Xing-Zhi Song,
- George M. Weinstock,
- and Richard A. Gibbs
Genome Res. April 2004 14: 721-732; doi:10.1101/gr.2264004
...of both the WGS and CBC methods, a “combined approach” for assembly was developed for the Rat Genome Sequencing Project (RGSP) ( Rat Genome Sequencing Project Consortium 2004 ). In the combined strategy, a BAC map is constructed and each BAC is sequenced to low (∼1×) coverage (“skimming”). WGS sequencing...
Select this article
LETTER: A Sequence-Ready BAC Contig of the GABA_A Receptor Gene Cluster Gabrg1–Gabra2–Gabrb1 on Mouse Chromosome 5
- Andreas Lengeling,
- Tim Wiltshire,
- Chris Otmani,
- and Maja Bućan
Genome Res. August 1, 1999 9: 732-738; doi:10.1101/gr.9.8.732
...) on mouse chromosome 5. Rat cDNA probes and specific sequence probes for all three GABAA receptor subunit genes have been used to initiate the construction of a sequence-ready contig of bacterial artificial chromosomes (BACs) encompassing this cluster. In the process of contig construction clones from 129...
Select this article
REVIEW: Copy number variation: New insights in genome diversity
- Jennifer L. Freeman,
- George H. Perry,
- Lars Feuk,
- Richard Redon,
- Steven A. McCarroll,
- David M. Altshuler,
- Hiroyuki Aburatani,
- Keith W. Jones,
- Chris Tyler-Smith,
- Matthew E. Hurles,
- Nigel P. Carter,
- Stephen W. Scherer,
- and Charles Lee
Genome Res. August 2006 16: 949-961; Published in Advance June 29, 2006, doi:10.1101/gr.3677206
...genetic disorders ( Iafrate et al. 2004 ; Sebat et al. 2004 ). Iafrate et al. (2004) used a bacterial artificial chromosome (BAC)-based array, with clones chosen at ∼1-megabase (Mb) intervals throughout the human , together with a technique called array-based comparative genomic hybridization (array CGH...
Select this article
METHODS: ARACHNE: A Whole-Genome Shotgun Assembler
- Serafim Batzoglou,
- David B. Jaffe,
- Ken Stanley,
- Jonathan Butler,
- Sante Gnerre,
- Evan Mauceli,
- Bonnie Berger,
- Jill P. Mesirov,
- and Eric S. Lander
Genome Res. January 1, 2002 12: 177-189; doi:10.1101/gr.208902
...to the repeat sequences. Two primary approaches can be taken to deal with complex s. The hierarchical shotgun approach involves generating an overlapping set of intermediate-sized clones [e.g., bacterial artificial chromosomes (BACs) with 200-kb inserts], selecting a tiling path of these clones...
Select this article
ARTICLE: Analysis of Segmental Duplications and Genome Assembly in the Mouse
- Jeffrey A. Bailey,
- Deanna M. Church,
- Mario Ventura,
- Mariano Rocchi,
- and Evan E. Eichler
Genome Res. May 2004 14: 789-801; doi:10.1101/gr.2238404
...ignored mapping data or clone-based sequences during the assembly process ( Table 3 ). In contrast, build 29 was largely based on the hand-curated assembly of sequence overlaps from a BAC-based tiling path of clones (∼400 Mb of sequence) and represented a relatively purist form of hierarchical clone...
Select this article
PERSPECTIVE: Genome annotation past, present, and future: How to define an ORF at each locus
- Michael R. Brent
Genome Res. December 2005 15: 1777-1786; doi:10.1101/gr.3866105
...program that could predict multiple and partial genes on both strands. This ability made Genscan suitable for annotating ORFs in anonymous DNA sequence such as that produced by sequencing random BAC clones. As the first GHMM suitable for annotating anonymous sequence, Genscan defined the state of the art...
Select this article
LETTER: Organization and Evolution of a Gene-Rich Region of the Mouse Genome: A 12.7-Mb Region Deleted in the Del(13)Svea36H Mouse
- Ann-Marie Mallon,
- Laurens Wilming,
- Joseph Weekes,
- James G.R. Gilbert,
- Jennifer Ashurst,
- Sandrine Peyrefitte,
- Lucy Matthews,
- Matthew Cadman,
- Richard McKeone,
- Chris A. Sellick,
- Ruth Arkell,
- Marc R.M. Botcherby,
- Mark A. Strivens,
- R. Duncan Campbell,
- Simon Gregory,
- Paul Denny,
- John M. Hancock,
- Jane Rogers,
- and Steve D.M. Brown
Genome Res. October 2004 14: 1888-1901; Published in Advance September 13, 2004, doi:10.1101/gr.2478604
...-ready map. This map comprises a minimal tiling path (MTP) of 95 clones from the C57BL/6 BAC library. Sequence assembly of the finished sequence generated from the MTP produced a single contig of 12,660,359 bp that extends across chromosome bands A3.1-A4, encompassing both light and dark staining Giemsa...
Select this article
LETTER: Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
- Laurie Gordon,
- Shan Yang,
- Mary Tran-Gyamfi,
- Dan Baggott,
- Mari Christensen,
- Aaron Hamilton,
- Richard Crooijmans,
- Martien Groenen,
- Susan Lucas,
- Ivan Ovcharenko,
- and Lisa Stubbs
Genome Res. November 2007 17: 1603-1613; Published in Advance October 5, 2007, doi:10.1101/gr.6775107
...clones from the Washington University fpc fingerprints ( Wallis et al. 2004 ). Sequencing and assembly BACs selected to create an efficient tiling path were isolated, fragmented, subcloned, and sequenced in both directions as previously described ( Dehal et al. 2001 , Detter et al. 2002 ). Detailed...
Select this article
Research: Copy number variation analysis in the great apes reveals species-specific patterns of structural variation
- Elodie Gazave,
- Fleur Darré,
- Carlos Morcillo-Suarez,
- Natalia Petit-Marty,
- Angel Carreño,
- Urko M. Marigorta,
- Oliver A. Ryder,
- Antoine Blancher,
- Mariano Rocchi,
- Elena Bosch,
- Carl Baker,
- Tomàs Marquès-Bonet,
- Evan E. Eichler,
- and Arcadi Navarro
Genome Res. October 2011 21: 1626-1639; Published in Advance August 8, 2011, doi:10.1101/gr.117242.110
.....org means of a two-step approach based on intraspecific aCGH. In a first phase (discovery phase), we used a -wide tiling-path 32K BAC array to discover CNV regions in chimpanzees, gorillas, and orangutans. In a posterior Refinement Phase we validated these CNVs, refined their boundaries, and discovered new...
Select this article
LETTER: Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex
- Diego Ottaviani,
- Elliott Lever,
- Richard Mitter,
- Tania Jones,
- Tim Forshew,
- Rossitza Christova,
- Eleni M. Tomazou,
- Vardhman K. Rakyan,
- Stephen A. Krawetz,
- Adrian E. Platts,
- Badmavady Segarane,
- Stephan Beck,
- and Denise Sheer
Genome Res. November 2008 18: 1778-1786; Published in Advance October 10, 2008, doi:10.1101/gr.082313.108
.... Summarized log2 ratios were calculated by taking a mean across duplicate arrays. Dye-swap hybridization for each pair of arrays was performed to normalize for any dye bias. The genomic position of the BACs used to generate the MHC tile path arrays was established using the NCBI build 34 assembly of the human...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Chen et al. 14 (4): 679.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: