Searching journal content for articles similar to Chen et al. 14 (10b): 2155.

Displaying results 1-10 of 16

For checked items

view abstracts
download to citation manager

Select this article
Resource: The full-length transcriptome of C. elegans using direct RNA sequencing
- Nathan P. Roach,
- Norah Sadowski,
- Amelia F. Alessi,
- Winston Timp,
- James Taylor,
- and John K. Kim
Genome Res. February 2020 30: 299-312; Published in Advance February 5, 2020, doi:10.1101/gr.251314.119
...the standard ONT protocol was use of SuperScript IV (Thermo Fisher Scientific) for reverse transcription. RNA sequencing on the GridION platform was performed using ONT R9.4 flow cells and the standard MinKNOW protocol script (NC_48Hr_sequencing_FLO-MIN106_SQK-RNA001).Preprocessing and alignmentsReads were...
OPEN ACCESS ARTICLE
Select this article
Resource: Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development
- Runsheng Li,
- Xiaoliang Ren,
- Qiutao Ding,
- Yu Bi,
- Dongying Xie,
- and Zhongying Zhao
Genome Res. February 2020 30: 287-298; Published in Advance February 5, 2020, doi:10.1101/gr.251512.119
...transcription and massively parallel sequencing (Helm and Motorin 2017; Yang et al. 2018). However, it provides poor resolution in terms of modification site. Third generation sequencing technology, for example, the Pacific Biosciences (PacBio) RSII platform, is able to produce long reads and detect DNA...
Select this article
Resource: Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome
- Kourosh Salehi-Ashtiani,
- Chenwei Lin,
- Tong Hao,
- Yun Shen,
- David Szeto,
- Xinping Yang,
- Lila Ghamsari,
- HanJoo Lee,
- Changyu Fan,
- Ryan R. Murray,
- Stuart Milstein,
- Nenad Svrzikapa,
- Michael E. Cusick,
- Frederick P. Roth,
- David E. Hill,
- and Marc Vidal
Genome Res. December 2009 19: 2334-2342; Published in Advance October 2, 2009, doi:10.1101/gr.098640.109
...previously annotated exons. Our results show that as much as 20% of the C. elegans genome may be incorrectly annotated. Many annotation errors could be corrected proactively with our large-scale RACE platform. Footnotes ↵ 5 Corresponding authors. E-mail kourosh...
OPEN ACCESS ARTICLE
Select this article
RESOURCE: Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions
- Chaochun Wei,
- Philippe Lamesch,
- Manimozhiyan Arumugam,
- Jennifer Rosenberg,
- Ping Hu,
- Marc Vidal,
- and Michael R. Brent
Genome Res. April 2005 15: 577-582; doi:10.1101/gr.3329005
.... 268 : 78 -94. ↵ C. elegans Sequencing Consortium. 1998 . Genome sequence of the nematode C. elegans : A platform for investigating biology. Science 282 : 2012 -2018. ↵ Cho, S., Suk-Won, J., Cohen, A., and Ellis, R. 2004 . A phylogeny of Caenorhabditis reveals frequent loss of introns during nematode...
Select this article
LETTER: C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions
- Philippe Lamesch,
- Stuart Milstein,
- Tong Hao,
- Jennifer Rosenberg,
- Ning Li,
- Reynaldo Sequerra,
- Stephanie Bosak,
- Lynn Doucette-Stamm,
- Jean Vandenhaute,
- David E. Hill,
- and Marc Vidal
Genome Res. October 15, 2004 14: 2064-2069; doi:10.1101/gr.2496804
.... Genome sequence of the nematode C. elegans : A platform for investigating biology. Science 282 : 2012 -2018. ↵ Cliften, P.F., Hillier, L.W., Fulton, L., Graves, T., Miner, T., Gish, W.R., Waterston, R.H., and Johnston, M. 2001 . Surveying Saccharomyces s to identify functional elements by comparative DNA...
Select this article
RESOURCE: Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based RNAi Library
- Jean-François Rual,
- Julian Ceron,
- John Koreth,
- Tong Hao,
- Anne-Sophie Nicot,
- Tomoko Hirozane-Kishikawa,
- Jean Vandenhaute,
- Stuart H. Orkin,
- David E. Hill,
- Sander van den Heuvel,
- and Marc Vidal
Genome Res. October 15, 2004 14: 2162-2168; doi:10.1101/gr.2505604
.... elegans ORFeome resource contains 11,942 cloned ORFs ( Reboul et al. 2003 ) and constitutes a platform for proteomic and functional genomic approaches ( Reboul et al. 2003 ; Rual et al. 2004 ). The C. elegans ORFeome resource is dynamic, with new ORFs added or corrected continuously ( Lamesch et al. 2004...
Select this article
LETTER: New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones
- Anita G. Fernandez,
- Kristin C. Gunsalus,
- Jerry Huang,
- Ling-Shiang Chuang,
- Nancy Ying,
- Hsiao-lan Liang,
- Caroline Tang,
- Aaron J. Schetter,
- Charles Zegar,
- Jean-François Rual,
- David E. Hill,
- Valerie Reinke,
- Marc Vidal,
- and Fabio Piano
Genome Res. February 2005 15: 250-259; doi:10.1101/gr.3194805
...from sets 1-3 that we had not previously assayed by injection ( Piano et al. 2002 ) for characterization in this study (see Fig. 3 ). After completing the RNAi analysis, we remapped this set of ORFeome clones and the PCR products used to define the ovary-enriched gene set to the latest WormBase freeze...
Select this article
RESOURCE: Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity
- Natalia J. Martinez,
- Maria C. Ow,
- John S. Reece-Hoyes,
- M. Inmaculada Barrasa,
- Victor R. Ambros,
- and Albertha J.M. Walhout
Genome Res. December 2008 18: 2005-2015; Published in Advance November 3, 2008, doi:10.1101/gr.083055.108
...layer of differential miRNA expression in nematodes. The data and transgenic lines that we present provide a platform for functional miRNA studies to delineate their roles in the development of the animal and to understand their function in gene regulatory networks. Results Generation of transgenic Pmi...
Select this article
PERSPECTIVE: ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List
- Michael A. Brasch,
- James L. Hartley,
- and Marc Vidal
Genome Res. October 15, 2004 14: 2001-2009; doi:10.1101/gr.2769804
..., S., et al. 2002 . Structural genomics: A pipeline for providing structures for the biologist. Protein Sci. 11 : 723 -738. ↵ Chen, N., Lawson, D., Bradnam, K., Harris, T.W., and Stein, L.D. 2004 . WormBase as an integrated platform for the C. elegans ORFeome. Genome Res. (this issue). ↵ Cheo, D...
Select this article
Resource: Massively parallel sequencing of the polyadenylated transcriptome of C. elegans
- LaDeana W. Hillier,
- Valerie Reinke,
- Philip Green,
- Martin Hirst,
- Marco A. Marra,
- and Robert H. Waterston
Genome Res. April 2009 19: 657-666; Published in Advance January 30, 2009, doi:10.1101/gr.088112.108
...is a substantially altered view of the C. elegans protein-coding potential that will be important to integrate into WormBase annotations ( Table 6 ). View this table: In this window In a new window Table 6. Summary of features identified Development of rigorous statistical approaches to these short, error...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Chen et al. 14 (10b): 2155.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: