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LETTER: Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity
- Shengfeng Huang,
- Shaochun Yuan,
- Lei Guo,
- Yanhong Yu,
- Jun Li,
- Tao Wu,
- Tong Liu,
- Manyi Yang,
- Kui Wu,
- Huiling Liu,
- Jin Ge,
- Yingcai Yu,
- Huiqing Huang,
- Meiling Dong,
- Cuiling Yu,
- Shangwu Chen,
- and Anlong Xu
Genome Res. July 2008 18: 1112-1126; Published in Advance June 18, 2008, doi:10.1101/gr.069674.107
...Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity Shengfeng Huang , Shaochun Yuan , Lei Guo , Yanhong Yu , Jun Li , Tao Wu , Tong Liu , Manyi Yang...
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LETTER: A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?
- Xavier Didelot,
- Mark Achtman,
- Julian Parkhill,
- Nicholas R. Thomson,
- and Daniel Falush
Genome Res. January 2007 17: 61-68; Published in Advance November 7, 2006, doi:10.1101/gr.5512906
...study has suggested that an emergent virulent clone of the bacteria Vibrio vulnificus was a hybrid between two major gene pools ( Bisharat et al. 2005 ). Conclusions How would it be possible to find definitive evidence for convergence and also for the potential role of a bacteriophage or natural...
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ARTICLE: Coping with cold: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
- Claudine Médigue,
- Evelyne Krin,
- Géraldine Pascal,
- Valérie Barbe,
- Andreas Bernsel,
- Philippe N. Bertin,
- Frankie Cheung,
- Stéphane Cruveiller,
- Salvino D'Amico,
- Angela Duilio,
- Gang Fang,
- Georges Feller,
- Christine Ho,
- Sophie Mangenot,
- Gennaro Marino,
- Johan Nilsson,
- Ermenegilda Parrilli,
- Eduardo P.C. Rocha,
- Zoé Rouy,
- Agnieszka Sekowska,
- Maria Luisa Tutino,
- David Vallenet,
- Gunnar von Heijne,
- and Antoine Danchin
Genome Res. October 2005 15: 1325-1335; Published in Advance September 16, 2005, doi:10.1101/gr.4126905
...CDSs are similar to Shewanella oneidensis genes ( Heidelberg et al. 2002 ), of which 47% are found in synteny groups, making the comparison with this aquatic organism particularly revealing ( Fig. 2A ). These mesophilic marine bacteria, together with Vibrio vulnificus , share with P. haloplanktis...
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LETTER: Functional insights from the distribution and role of homopeptide repeat-containing proteins
- Noel G. Faux,
- Stephen P. Bottomley,
- Arthur M. Lesk,
- James A. Irving,
- John R. Morrison,
- Maria Garcia de la Banda,
- and James C. Whisstock
Genome Res. April 2005 15: 537-551; doi:10.1101/gr.3096505
..., VIC 3800, Australia 2 Victorian Bioinformatics Consortium, School of Computer Science and Software Engineering, Monash University, Clayton Campus, Melbourne, VIC 3800, Australia 3 ARC Centre for Structural and Functional Microbial Genomics, School of Computer Science...
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RESOURCE: cpnDB: A Chaperonin Sequence Database
- Janet E. Hill,
- Susanne L. Penny,
- Kenneth G. Crowell,
- Swee Han Goh,
- and Sean M. Hemmingsen
Genome Res. August 2004 14: 1669-1675; doi:10.1101/gr.2649204
..., L., and Chow, A.W. 2002 . Phylogenetic study and identification of human pathogenic Vibrio species based on partial hsp60 gene sequences. Can. J. Microbiol. 48 : 903 –910. ↵ Lew, A.E., Gale, K.R., Minchin, C.M., Shkap, V., and de Waal, D.T. 2003 . Phylogenetic analysis of the erythrocytic Anaplasma...
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LETTER: Comparative Analysis of Superintegrons: Engineering Extensive Genetic Diversity in the Vibrionaceae
- Dean A. Rowe-Magnus,
- Anne-Marie Guerout,
- Latefa Biskri,
- Philippe Bouige,
- and Didier Mazel
Genome Res. March 1, 2003 13: 428-442; doi:10.1101/gr.617103
...remote from those previously characterized. Every Vibrio species examined thus far has been found to harbor an SI. In addition, we have now identified the SI integrase and the first cassettes carried in the SIs of L. anguillarum and V. vulnificus , a fish pathogen and an emerging human pathogen...
REVIEW: Applications of the polymerase chain reaction in environmental microbiology.
- A K Bej and
- M H Mahbubani
Genome Res. February 1992 1: 151-159; doi:10.1101/gr.1.3.151
....R., Brayton, P.R. Grimes, D.J. Roszak, D.B. Huq, S.A. and Palmer. L.M. 1985 . Viable but nonculturable Vibrio cholerae and released pathogens in the environment: Implication for release genetically engineered microorganisms. BioTechnology 3 : 817 – 820 . 49. Hussong, D., , Colwell, R.R. , O'Brien, M...
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